Raphanus sativus (radish): 108842881
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Entry
108842881 CDS
T06014
Name
(RefSeq) U-box domain-containing protein 13
KO
K27628
U-box domain-containing protein 12/13/14 [EC:
2.3.2.27
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
108842881
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rsz04121
]
108842881
Enzymes [BR:
rsz01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108842881
Ubiquitin system [BR:
rsz04121
]
Ubiquitin ligases (E3)
U-box type E3
108842881
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arm
U-box
ARM_ARMC5
HEAT_2
Neurochondrin
RPW8
KAP
zf-Nse
zf-RING_UBOX
MCAfunc
MLKL_N
zf-C3HC4_4
Arm_2
zf-C3HC4_2
zf-C3HC4
zf-NOSIP
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
108842881
NCBI-ProteinID:
XP_018471429
UniProt:
A0A6J0MH32
LinkDB
All DBs
Position
2:complement(15024312..15027069)
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AA seq
661 aa
AA seq
DB search
MEEEKGAVVAQSLIDVVNEISSVSEYRTTVKKLCSNLARRLKLLVPMFEEIRESNEPIDE
DTLKTLVSLKEAMSSAKDYLKFCSQGSKIYLVMEREQVTSKLMEVSVQLEQSLSKIPYED
LDISDEVREQVELVLSQFRRAKGRVDASDDELYEDLHSLCIRSSDLDDYQPTLQRVAKKL
HLMEIPDLAQESVALHEMVASSGGGDGGESIEEMAMVLKLIKDFVQMETDNSEDQNAGAN
SSSNGQTSTSQKIPVIPDDFRCPISLEMMRDPVIVSTGQTYERTCIEKWIEAGHSTCPKT
QQALTSTTLTPNYVLRSLIAQWCEANDIEPPKPPSSLRPRKLSSFSSPAEANKIEDLMWR
LAYGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLATPDSRIQEHSVTALLN
LSICENNKGAIVSAGAIPGIVQVLKKGSMEARENAAATLFSLSVIDENKVTIGSLGAIPP
LVVLLNEGTQRGKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLTEPGSGMVDEALAI
LAILSSHPEGKAIIGSSDAVPSLVEFIRTGSPRNRENAAAVLVHLCSSDSQHLVEAQKLG
LMGPLIDLAGNGTDRGKRKAAQLLERISRLAEQQKETAARAEDKEEAEPTPSASTAEAAD
T
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagagaaaggtgctgttgttgcgcagagcttaatcgatgtagtgaacgagatt
tcgtcagtttccgagtaccgtacaacggtgaagaagctctgcagtaatcttgcgaggagg
ttgaagctgcttgttccgatgttcgaggagatcagggagagtaacgagccgatcgatgaa
gatacgttgaagacgttggtctccttgaaggaagccatgtcctccgccaaggattatctc
aaattctgcagccaagggagcaagatttatctggtcatggagagggaacaagtgacaagt
aaattgatggaggtttcagttcagttagagcaatctttgagcaagattccgtatgaggat
cttgacatctctgatgaagttagagaacaagttgagttagttctcagccagtttcgccga
gccaaaggaagagtagatgcatcagacgatgagctatatgaagatcttcactcactgtgc
atcagaagcagtgatttagatgactatcagcctaccctgcagcgggttgctaagaagtta
catttgatggagattcctgatctagctcaagaatcagtggctctgcacgagatggttgct
tcaagcggtggtggagatggtggtgaaagcattgaggagatggcaatggtactcaagctg
attaaggattttgtgcagatggagactgacaatagtgaggaccagaatgctggagcaaac
tcaagtagcaatggacagacttctacgagtcagaagataccagtgattcctgatgatttc
cgctgtccaatatctctggaaatgatgagagatccagttatcgtttctacagggcagacc
tacgaacgcacctgcattgagaagtggatagaagctgggcattcgacatgtccaaaaaca
cagcaggcgctaacaagcacaacgctcacacccaactacgttctccgcagtctgatagct
cagtggtgtgaggccaatgatattgagcctccaaaacctcctagcagtttaaggcccagg
aaactatcatccttttcttccccagcagaagcaaacaagatcgaagatcttatgtggaga
ctggcttacggaaaccctgaggaccaacgatctgcagctggagaaatccgcctccttgca
aaacgaaatgcagacaaccgtgtggccattgccgaagctggggccatacctctcctcgtc
ggcctcctcgcaactcctgattctcgtatccaagaacattcagtaacagctcttctaaac
ctctccatatgtgagaacaacaaaggagccattgtctctgctggagctatccctggtata
gttcaagtgctcaagaaaggaagcatggaggctagagagaatgcagcggctacgcttttc
agtctctccgtgattgacgagaacaaggtgactattggttccttgggagcaatcccaccg
ctcgttgtactgcttaatgaaggtacacaaagaggcaagaaagatgcggctactgcactt
ttcaacctctgcatatatcaaggaaacaaagggaaggccatacgcgcaggcgtgattccc
accttgacaagactcttaacagagccaggaagcggaatggtcgacgaggcgcttgccatt
ctggcgattctctctagccatcccgaagggaaagcaatcataggatcatccgacgcagtc
ccgagtcttgtggagtttatcagaactggatctcctagaaacagagagaacgcagctgcg
gttctagtccacctctgttctagtgactcacaacatctggtcgaagcacagaaactcggt
cttatgggtccattgatagatttagctggaaacgggacagatagagggaaaagaaaagca
gctcaattgcttgaacgtataagccggctagctgaacagcagaaggagacggcagcacgg
gcagaagacaaagaagaagctgaaccaacaccttcagcatccaccgcagaagctgctgat
acttaa
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