Raphanus sativus (radish): 108842928
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Entry
108842928 CDS
T06014
Name
(RefSeq) protein PAT1 homolog 2
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108842928
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108842928
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108842928
mRNA degradation factors
5'-3' decay
Decapping complex
108842928
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GFIT
Other DBs
NCBI-GeneID:
108842928
NCBI-ProteinID:
XP_018471481
UniProt:
A0A6J0MJ19
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Position
2:complement(29210807..29214680)
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AA seq
793 aa
AA seq
DB search
MMERSDSRDLYYNLARASSSSNNNNSTLFDASQYEFFGQSLEEVELGGLDDDACSVLGHA
DDGDGYHLFDKREGAGLGSLSEMDDLATTFAKLNRVVSGPKHLGVIGDRGSGSFSRESSS
ATDWTQDNEFTSWLDNQHTLEEQAHEPSWASHPHSSANSNSLHRTSSYPQQQAQLQHYSS
EPIIVPESTFTSFPSPGNRAQQSSPSHIHRAPSLPGSSQLNLPAPNSSAFHLSHGPPHYN
SSNLARYASCGPTLGNNTVQPPPPHWVTDPGLLLLHGDRSGLLHSLVQQQQQQQQQLQLP
PRNGFASQQQLISLQQRQQSLAHLAALQSQLYSSCPSPSREAREHKHKPSHRSRKNRSSS
GGSGLLSQQASLSSQKSETGLQFRSKYMTSEEIESILKMQHSNSHSSDPYVNDYYHQARL
AKKSSKTLFCPSHLKDHHHNHSRSRNSTSSSDQQPQVHVDALGKINLPYVCRPRALLEVV
DSPPRGRSHLEEEPLVAARVTIEDAFGVLIDIVDVDRTLQCNRPQDGGGSQLVRKRQLLL
EGLATSLQLVDPFKNKTGLTSKDDIVFLRIATLPKGKKLLAKYIQLLVPGTEIARVVCMA
VFRHLRFLFGGLPSDASAAQTVGNLAKAVTVCVQAMDLRALSACLAAVVCSSEQPPLRPI
GSPSGDGASVVLVSLLERAAADEVVKNSNGGLWRASFDEFFVLLTKYCRSKYETIHGQKQ
ENAAAAAGDVLEVAIKREMPAELLRASLRHTSEEQRNFLLNFGRKASSSQAPVSELTTGT
ARGGQVNSESVRA
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atgatggagagatctgattctagagatctttactacaacttagctcgagcttcttcatct
agtaataataataacagcacactctttgacgcatctcaatatgagttctttggtcaaagt
cttgaagaagttgaattgggaggtcttgatgatgatgcctgttctgttctcggacacgcc
gatgatggtgatgggtatcacttgtttgataaaagagagggtgcaggtttgggatcattg
tctgaaatggatgatctcgccacaacttttgctaagctaaacagagttgtttccgggccc
aaacaccttggagtcattggtgacagaggatcaggttccttttcaagggaaagttcttct
gcaacagattggacacaggataacgagttcacaagctggttggacaaccagcacacgctt
gaagaacaagcacatgaacctagctgggcttcacatccacattcatcagctaactcaaac
tccttgcacagaacatcctcatatcctcagcagcaagcacagctgcagcactacagcagc
gaaccgatcatcgtaccggaatctaccttcacctcttttccttcccctggaaacagagct
caacaatcttcaccgagccatattcaccgcgctccttctcttcccggtagcagccagcta
aacctccccgcaccgaacagctctgctttccatctttcacatggaccgccgcactacaat
agtagtaacttggctaggtacgcctcatgcggtcctactcttggtaacaacacggtgcaa
cctcctcctcctcactgggttactgaccccggccttcttcttctgcacggcgatcgctcc
ggactgttacacagtcttgtccaacagcaacaacagcagcagcagcaactccagctccct
cctcggaatggtttcgcatcacaacaacagctgatctctcttcagcagagacaacaatct
ctagcgcatctcgccgcgttacagtcccagctgtacagctcatgcccttccccatcccgc
gaagcaagggaacacaaacacaagccgtctcacaggagccgaaagaacagaagcagcagc
ggaggaagcggcctcctctcccaacaggcatctctctccagccagaaaagcgagaccgga
cttcagttcagatcgaagtacatgacgtcagaagagatcgagagcatcctcaagatgcag
cactccaactcccacagcagcgacccttacgtcaacgattattaccaccaagctcggctt
gctaaaaagtcttcaaagactctcttctgtccttctcatctgaaggaccaccaccacaac
cactctcggtctcgtaatagtactagtagctcggatcagcagccgcaagtccacgtggac
gctcttggaaagatcaatcttccttacgtttgcaggccacgcgctttactagaggttgtt
gactcacctcctcgtggaaggtctcatctggaggaggaacctctcgttgcggctagagtc
acaatcgaagatgctttcggagttcttatagatatagtcgacgtcgacaggactctccag
tgcaaccgtccgcaagacggtggcggctctcagctcgtgaggaagcgtcagctcctccta
gaaggcttagcaacttctctccagctcgtcgatcccttcaaaaacaaaaccggtttgacc
tcaaaggacgatatcgtctttctacgcatagcgacgcttcccaaggggaagaagctgctc
gcaaagtatatacagcttcttgtccccggtactgagatcgctcgtgttgtctgcatggct
gtgtttcgccacctcaggtttttattcggtggtttaccttcggatgctagtgcagcgcag
acagtaggtaaccttgctaaagcggttaccgtctgtgtccaagcgatggatctgcgagcg
ctgagcgcttgtctcgcggctgttgtctgttcctcggagcagccgcctctcaggcctata
ggaagcccttcgggggatggagcgtcggttgtgttggtgtctcttctcgagagagctgct
gctgatgaagttgtgaagaactcgaacggtggactgtggagagcctcgtttgatgagttc
ttcgtgctgcttacgaaatattgcaggagcaagtatgagacgatacatggtcagaagcag
gagaatgctgcagcagctgctggtgatgtgttggaggtagctataaagagggagatgcct
gctgagcttttgcgtgcgagcttgcgtcatacgagtgaagagcagcggaactttttgctc
aactttggtcgtaaagcttcttcttcacaggcgcctgtgagcgagttgacaaccggtact
gcaaggggtggacaggttaactctgagtctgtcagggcttaa
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