Raphanus sativus (radish): 108842953
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Entry
108842953 CDS
T06014
Name
(RefSeq) uncharacterized protein LOC108842953 isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108842953
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108842953
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
108842953
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
Zn_ribbon_RanBP
Motif
Other DBs
NCBI-GeneID:
108842953
NCBI-ProteinID:
XP_018471517
UniProt:
A0A6J0MGD3
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Position
2:26842214..26846191
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AA seq
715 aa
AA seq
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MPRKGFSNFDDYDDGFDDDDDAYDYDYDVDVEDDEHEAAEYKEEVVAQRGVWRCAICTYD
NDESMHVCDICGVIRHPVPGGNITVSKNTVEGRCKEPTVSKLAKSLLESVPSKRAQGPLP
GISRGNIHDLHKAFSSNSSCLSIAPFKFDAPSPDDLVSNGLKSSRTGPKDSMKQKEKQDS
AEQNPIKKGADRSETSSQVRHGNVGVAGGIKTFKSLPKAKADKSKETSSSSKNMEVSESL
SDTMNNMSLAGETETSRDIKIKKARSKSNHKPEEWMLLDKESDTLSQLNLAIVGHVDSGK
STLSGRLLHLLGKISQKQMHKFEKEAKSQGKGSFAYAWALDESAEERERGITMTVAVAYF
NSKRHHVVLLDSPGHKDFVPNMIAGATQADAAILVIDASIGAFEAGFDNLKGQTREHARV
LRGFGVEQVIVAVNKMDIVGYSKDRFDLIKQHVGSFLHSCRFKESSLTWIPLSAMENQNL
VSAPSESRLSSWYQGPCLLDAVDAVKSPDRDVSKPLLMPICDVVRSNSQGQVSACGKLEA
GAVRPGSKIMIMPSGDQGTVRSLERDSQGCTIARAGDNVAVALQGIDANQVMAGGVLCHP
DYPVSVATHLELMVLVLEGATPILLGSQLEFHVHHAKEAATVVKLVAMLDPKTGEPTKKS
PRCLTAKQSAMLEVSLQYPVCVETFSESRALGRVFLRSSGRTVAMGKVTRIIQDS
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgtaaagggttctccaatttcgatgattacgatgatggttttgatgatgacgac
gatgcttatgattatgactatgatgttgatgtagaagatgatgaacacgaagctgctgaa
tacaaggaagaagtagttgctcagagaggggtttggcgatgtgcgatctgtacatatgac
aatgatgagagtatgcatgtttgtgatatctgcggtgttattcgtcatcctgtgcctggt
ggaaacataactgtcagtaagaatacagttgaaggcagatgcaaagaaccaacagtttcc
aaattggcaaagtctcttttggaatcagttccatcgaaaagggctcagggccctctgcct
ggaatttcccgtgggaatattcacgatctccacaaggcttttagttctaatagttcctgc
cttagtatagcaccgttcaagtttgatgctccctcgccagatgatttagtctccaacgga
ctgaaatcctcgagaactggtcctaaagatagcatgaagcagaaagagaagcaagatagc
gcagaacagaatcctataaagaaaggagcagacagatcagaaacaagctcccaagttagg
cacggcaacgttggtgttgctggcggcataaaaactttcaaaagtttgccaaaagcaaaa
gcagataaatctaaggagacaagttcttcgtcaaaaaacatggaggtgtcggagagtctg
tctgatactatgaacaatatgtctttggctggggaaacagaaacctccagggatataaaa
attaaaaaagcaagatcaaaatcaaatcataagccagaggagtggatgcttcttgataaa
gaatcagatacactaagtcaactgaatcttgccattgtgggacatgttgattccggtaag
tcaacactttcaggtaggctactgcatctgttgggaaaaatatctcaaaagcaaatgcac
aagtttgagaaagaagcaaagtcgcaggggaaagggtcctttgcatatgcctgggcgttg
gatgagagtgctgaagagagggaacgaggaataacgatgactgtagccgttgcctatttc
aattccaaaagacatcatgttgttttgctcgactctcctgggcacaaagattttgttcca
aacatgatagcgggagcaacacaagcagatgctgcgattcttgtcatagacgcatctatc
ggtgctttcgaagctggttttgataatttgaaaggacagacaagggagcatgcacgggtt
ctccgaggttttggcgtggagcaagtcatagttgcggttaacaaaatggacattgttggt
tactcgaaggacagatttgatttgattaagcaacatgttggatcgtttctgcattcctgt
cgttttaaagaatcatctctgacatggattccattgagtgccatggaaaatcaaaacttg
gtatcggctccctctgaaagccgcctatcctcatggtaccaaggtccatgtttattggat
gccgttgacgctgtcaagtctcctgatagagacgtctcaaagcctctgctcatgcctata
tgtgatgttgtaagatcaaattcgcaagggcaagtatctgcatgtggcaaacttgaagct
ggagctgttcggccaggatccaagataatgattatgccatcaggagatcaaggaaccgtg
cggtctctggagcgtgactctcagggttgcaccattgcaagagcaggagataacgtagca
gtagctttgcaagggattgatgcaaatcaagtaatggcaggaggtgtgctgtgccatcct
gattacccggtttcagtagcaactcatttggaattgatggtgctcgtcttggaaggagca
acaccgatcttgctcggttctcagttggagtttcatgtgcaccatgcaaaggaagcagca
acagttgtgaagcttgtggcaatgcttgatcccaaaacaggggaaccaactaagaagtct
cctcgttgtctaactgctaaacagagtgcaatgcttgaggtgagtcttcagtatccagtt
tgtgtggagacattttctgaaagtagggctcttggaagagtgttccttagatcatcagga
agaacagtggcgatgggcaaagttactcggattatccaagactcataa
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