Raphanus sativus (radish): 108843097
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Entry
108843097 CDS
T06014
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108843097
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108843097
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108843097
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108843097
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
108843097
NCBI-ProteinID:
XP_018471690
UniProt:
A0A6J0MGQ7
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Position
2:complement(21191809..21195987)
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AA seq
621 aa
AA seq
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MSNLHSSLNGSASNLPDGSGRSFASSYTGQSGAPSPGFHHSGGSLQGLHNLHGSYNVGNM
QGTLSSRNSSLNSLPSPGVQQANGSFSSGRFSSNNLPVALAQLSHGNSHGHSGIPNRGGI
NVGNPGYSSNANGVGGSLTGILSTSAGLSSRNSVSNIGMSQLLGNAGPRITNAMGNMVGG
VNLGRNISSGGLSMPGLSSRLNMAANSGSGLNVQGQNRMLGGGLPQGSQVMSMLGNSYHA
GGGQLSQNHVNNMMLSDHSNDSSLFDINNDFPQLTSRPGSASGTQGQLGSLRKQGLGVPI
VQQHQEFSIQNEDFPALPGYKGAGLLSSSVEIFAGGSSDYPMDLHQKEQLHDSAMSMMHS
QNFSIPRSGGFNLGGTYPSHRTQQQPPHTSSGGLQGLGLRPLNSPNSVSSNGYDQLIQQY
QQQQNQSQFPVQQMSSINQFRDSEIKSEADPFCLLGLLDVLNGTKPDLTSLALGIDLTTL
GLDLNSTGKLYKTFASPWTNEPAKTEVEFTVPNCYYATPPPPLTRASFRRFSFELLFYTF
YSMPKDEAQLYAADELYERGWFYHKEHKLWFFRVGEPLVRTAVYERGTYECLDPNSFKTV
RKEHFVVQYEHMEKRPSLVQH
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaccttcattcatctctcaatggttcggcttccaatttaccggatggttcggga
agatcttttgcttcttcctatactggtcaatctggtgcaccctctcccggttttcatcat
tctggtggaagtcttcagggactacataatcttcatgggagctataatgtcgggaacatg
caaggtacactttcgtcaagaaactcgagtctgaatagtctaccatctcccggtgtacaa
caagcgaacgggagtttttctagcggaagattttcttcaaataacctacctgttgctctc
gctcagctgtctcatggtaactcacacgggcactctggaataccaaatagagggggtatt
aatgttggcaaccctggatatagtagtaacgcaaatggagttggtggttctcttactggg
attctctccacatctgctggactcagtagcaggaatagtgtttcaaatattggaatgtcc
cagctgttggggaacgcaggtcctcggataacaaatgcaatgggaaacatggttggtggt
gttaacttggggaggaatattagctctggtggattgtctatgcctggtctttcttcacgg
ctaaatatggcagctaatagcggatcaggattaaatgttcaaggacaaaaccgaatgctg
ggtggaggacttcctcaaggatctcaggtcatgtctatgctggggaactcctaccatgct
ggtggcggccaactttcgcagaaccatgttaacaatatgatgctcagtgatcactctaac
gacagttctctttttgacatcaataacgatttcccccagctgacaagtcgtcctggttct
gctagtggcactcaaggacaactgggctctttgaggaaacaaggtttaggagtcccaatt
gtccaacaacatcaagagttcagcatccaaaatgaagactttccggctctccctggatat
aaaggtgctggtttattatcgtcttcagtggagatttttgcaggtggtagttctgattat
cctatggatttgcatcagaaagaacaactccatgacagtgctatgtcaatgatgcactct
caaaacttttctatacctagatctggtggtttcaacttagggggaacatatccatcacat
cgtacacagcaacagccaccacatacttcatctggtgggctacaaggtcttggcttgaga
cctctaaactcgcccaattcagtttccagtaacggttatgatcagcttattcagcagtat
cagcagcaacaaaatcaatcccagttccctgtgcaacaaatgtcatccatcaaccaattt
agagattctgagattaagtcggaagcagatcctttctgtttgcttggcttgttagacgta
ctaaacgggaccaaacctgatttaacctctcttgctctcggcatcgacttaacaacgcta
ggattggatttgaattcaactggaaaactctacaagacatttgcttccccttggactaat
gaacctgcaaagacagaggtcgagttcacagtgccaaattgttactacgcaacgccacct
ccgcctctaactcgagcaagtttcagaaggttctccttcgagttattgttttacacattt
tacagtatgccaaaagacgaagcacaactatacgcagcagatgaactttacgaaagaggt
tggttttaccataaggaacacaaattatggttcttcagagttggggaacctttggtcaga
acagctgtatatgaaagaggaacatacgagtgcctagatccaaactccttcaaaacagtc
agaaaggaacattttgttgtccagtatgagcacatggagaagagaccaagcttggtgcag
cattga
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