Raphanus sativus (radish): 108843276
Help
Entry
108843276 CDS
T06014
Name
(RefSeq) probable rhamnogalacturonate lyase B isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
108843276
Enzymes [BR:
rsz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
108843276
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
Motif
Other DBs
NCBI-GeneID:
108843276
NCBI-ProteinID:
XP_056862102
UniProt:
A0A9W3DE07
LinkDB
All DBs
Position
1:complement(4342674..4346930)
Genome browser
AA seq
675 aa
AA seq
DB search
MKKLADRLLHRFTNHETASNADHHWTGEGTSSLRHRQDRRMPLQGVRLHISDRYVVMDNG
ILQVTLSKPGGIITGIKYNGVDNVLEVRNKETNRGYWDLHWNEPGGKGIFDVISGETFRV
IVETEEQVEISFLRTWNPSLEGKYIPLNIDKRFIMLRGSSGVYSYGIYEHLKEWPGFELG
ETRIAFKLRKDNLIYRFHYMAVADDRKRIMPFPDDLCKGRCQTLDYQEASLLTAPCDPHL
QGEVDDKYQYSCENKDLRVHGWISFDPPVGFWQITPSNEFRSGGPLKQNLTSHVGPTTLA
VFHSTHYAGKTMMPRFECGEHWKKVYGPVFIYLNSTAIRDDSLFLWDDAKIKMMAEVESW
PYSFVSSEDYPKSEERGTASGRLLVCDRFVSNDLISAVGAYVGLAPPGDAGSWQIECKGY
QFWAIADEAGYFSIENVRPGEYNLYAWVPGFIGDYHNNTIVSVTSGCKIEMGDIVYEPPR
DGPSLWEIGIPDRKASEFFIPDPDPTLVNRVLVHPQDRFRQYGLWKRYTDLYPNDDLVYT
IGVSDYRRDWFFAHVPRKKGDVYEGTTWQITFKHENIDQKTNYKLRVAIASATLAELQVR
VNDAEATRPLFTTGLIGRDNSIARHGIHGVYMLYTVNIPGNRFVQGDNTIFLKQPRCNGP
FQGIMYDYIRLEGAP
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaactggctgatcggctcttgcatcgtttcaccaaccatgaaaccgcttcaaac
gccgaccaccactggacaggtgaagggacgagtagtcttagacatagacaggatcgaagg
atgcctcttcaaggtgtccggcttcatatcagtgaccgttatgttgtgatggataatgga
atcctccaagttacgctttcgaaaccaggtggtatcatcaccgggataaagtataatggt
gttgacaatgtgctcgaagttcgtaacaaggagaccaatagagggtactgggatctgcac
tggaatgaacctggaggcaagggaatatttgatgtcatcagtggagagactttcagggtg
atagtcgagactgaagaacaggttgagatctcatttctaagaacatggaatccatccctt
gagggaaaatacattcccctgaatatcgataaaaggtttataatgctccgtggctcttct
ggagtttactcatacggcatttatgaacaccttaaagagtggcctggtttcgaacttggg
gaaacaagaatcgccttcaagctcagaaaagacaatttaatatacaggttccattacatg
gcggtggcagatgacagaaaaaggataatgccatttccagatgatctatgcaaaggaaga
tgccaaaccctagattaccaggaagcttccctgctcactgctccgtgtgatccacaccta
caaggcgaagtagatgacaagtaccaatactcatgtgagaataaggatctgagagtacat
ggttggatatccttcgatccgccagtaggattctggcaaattacgcccagtaatgagttc
cgatcaggcggaccactcaaacaaaaccttacctcacatgttggcccaaccacccttgca
gtgtttcacagtacacattatgcgggaaaaacaatgatgccacgctttgaatgtggtgag
cattggaagaaagtctatggccctgttttcatttacttaaactccacagctattagagat
gattcactcttcttatgggatgatgctaagataaagatgatggctgaggttgaaagttgg
ccttatagctttgtgtcatctgaggactatccaaagtctgaagaacgtggcacggccagt
ggccgattacttgtctgtgataggtttgtaagcaatgatttgatttcagcagtaggtgct
tatgtgggtttggctccacctggtgatgctggttcttggcaaatagaatgcaagggatac
caattttgggcgatagcagatgaggctggctacttttcgatagaaaatgtgcgtcctggc
gagtacaacctctatgcatgggttcctggcttcattggagattatcataacaacactatt
gtttctgttacttcagggtgcaagattgaaatgggtgatattgtctatgaacctccaaga
gatggaccttccttatgggaaataggcatccctgacagaaaagcttccgagttctttatc
ccagatcctgatcccacactagtaaacagagttttagtccatcctcaagacaggttcagg
caatatggtttgtggaagagatacacagatctgtatccaaatgatgaccttgtttacact
attggtgtaagcgattatcgcagagactggttctttgctcatgttcctaggaagaaagga
gatgtgtatgaaggtacaacttggcagattacgtttaaacacgaaaacattgatcaaaag
acgaattacaaactccgtgttgccatagcatctgccaccttagcagagttgcaggtgaga
gtcaatgatgctgaagcaacacgtcccctgttcacaactggacttatagggagagacaac
tcgattgcaaggcacggaatccacggggtgtacatgctgtacacggtgaacataccggga
aacaggtttgtgcaaggtgataacacaatattcctgaaacagccaagatgcaatggtccc
tttcaagggattatgtacgactacattcgtcttgaaggcgctccttaa
DBGET
integrated database retrieval system
