Raphanus sativus (radish): 108843294
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Entry
108843294 CDS
T06014
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108843294
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rsz03041
]
108843294
03009 Ribosome biogenesis [BR:
rsz03009
]
108843294
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108843294
Spliceosome [BR:
rsz03041
]
Complex A
U1 snRNP components
U1 related factors
108843294
Complex B
108843294
Ribosome biogenesis [BR:
rsz03009
]
Eukaryotic type
Pre-60S particles
Helicases
108843294
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
108843294
NCBI-ProteinID:
XP_056858877
UniProt:
A0A9W3D559
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All DBs
Position
2:27854160..27858309
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AA seq
687 aa
AA seq
DB search
MAATATASTIRYAPEDPNLPKPWKGLVDSRTGYLYFWNPETNVTQYERPPGLAPPVSSPV
QTQQQPSSGYSSGKDDDKYSKGSDEPKTDSVSRFSEASRSGPIDSSNAASGPGNAASCGL
AATRPPSSAAGTEKMSPEAYCRRHEITVTGGQVPPPLMSFEATGFPPELLRELYGAGFSA
PSPIQAQSWPIAMQNRDIVAVAKTGSGKTLGYLIPGFMHLQRVRNDSRMGPTILVLSPTR
ELATQIQAEALKFGKSSRISCACLYGGAPKGPQLKEIERGVDIVIATPGRLNDILEMKRI
SLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIASDLLGNP
AQVNIGNVDELVANKSITQTIEVIPPMEKQRRLEQILRSQEPGSKIIIFCSTKRMCDTLA
RNLMRTFGAAAIHGDKSQQERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFP
NGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHATDLIKILEGASQKVPQEVRELATRGG
GMNKFRRWGTPSSGGGGGYGDSGYGGRGGGRGDSGYGGRGDSGYGGGRGGSGYGGRGDSG
YGGGRGDSGYGGGRGDSGYGGGRGGSGYGGRGGGDSGGRGSWSDSSGRGSGWGRERSRSP
ERFNRGAAPSTSSPPRSFHEAMMMRQK
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggctgctactgctacagcatcgacgatccgttacgcacctgaggatcctaatctccct
aagccgtggaaaggtcttgtggatagtcgaactgggtacctgtacttttggaatccggag
accaatgttacccagtacgagagaccacctggtttagctccccccgtaagctctcctgtt
cagactcagcaacaaccttcttctgggtacagttctggaaaggatgatgataagtatagt
aagggcagcgatgagcctaagactgactctgtttcaaggtttagtgaggcaagcagaagt
ggaccaatagattcaagtaatgctgccagtggaccagggaatgctgcatcttgtggattg
gctgccacaaggcctccttcttcagctgcagggactgaaaaaatgtccccagaggcctat
tgtcgccgccatgaaattactgtcactggaggccaagtgccgccacctttgatgtcgttt
gaagccactggtttccctccagagcttctgcgagagttatacggtgcaggattctctgct
ccaagtccaattcaagctcagtcatggccaattgcgatgcagaacagagacatagtagcc
gtcgctaaaacaggctctggaaaaactctcggttacttgattccaggcttcatgcacctc
cagcgggtccgcaatgactcacgaatgggcccaacgatcttggtgttgtcacctactagg
gagctggccacacaaatccaagctgaagctttgaagtttgggaagtcatcaagaatctcc
tgtgcatgcttgtatggtggagcaccaaagggtcctcagctgaaggaaatagagagaggt
gttgatatcgtcattgcaactcccgggagattgaatgatatccttgagatgaagagaatc
agtcttcatcaagtgtcttaccttgtgctagacgaggctgatagaatgttggacatgggg
ttcgagcctcagatcaggaagattgtcaatgaggtccccactaagcgtcaaaccctcatg
tacacagccacatggcctaaagaggtcaggaaaatcgcatccgatcttcttggtaaccct
gcacaagtcaacattggtaacgtcgatgagctcgtggccaacaagtctatcactcagact
attgaagtcataccaccgatggagaaacaaagaaggttggagcagatattgcggtctcag
gagccaggctccaagattattatcttctgttcgaccaagaggatgtgtgatactctcgcg
aggaacttgatgcgaacgtttggagctgctgctatacatggagacaagtctcagcaagag
cgagatgatgtgctgaatcagtttaggagtgggaggactcctgttctcgttgcaaccgat
gtagctgctcgtggacttgatgttaaagacatcagggtggtggtgaactatgatttccca
aatggagtggaggattatgttcacagaatcggaagaacgggaagagctggagcaacaggt
ttagcttacaccttctttggggaccaagatgcaaaacatgctacggatctgatcaagatc
ttggaaggagcaagccagaaagtccctcaggaggtacgtgagttggctacacgcggtggt
ggtatgaacaaattccgccgctggggtacaccttcctctggtggtggtggcggctatggt
gattctggctatggtggtcgtggaggtggccgtggtgattctggttatggtggacgtggt
gattcaggttatggtggaggtcgtggtggttctggttatggaggtcgtggtgattctggt
tatggtggaggtcgtggtgattctggttatggtggaggtcgtggtgattctggttatggt
ggaggtcgtggtggttccggttatggaggacgtggaggtggtgactcagggggtagagga
agctggtctgacagcagtggtcgtggctcaggatggggaagagagaggagtcgtagtcca
gagagattcaacagaggtgctgcaccgtccacttcctcaccgcctcgcagctttcacgag
gcgatgatgatgagacagaagtaa
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