Raphanus sativus (radish): 108843807
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Entry
108843807 CDS
T06014
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH2
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108843807
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108843807
03012 Translation factors [BR:
rsz03012
]
108843807
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108843807
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
108843807
Translation factors [BR:
rsz03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
108843807
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
R3H
DEAD
OB_NTP_bind
HA2_C
HA2_N
nSTAND3
Ank_2
AAA_19
AAA_22
Ank_5
ATPase
AAA_7
Sigma54_activat
AAA_11
PhoH
Sigma54_activ_2
AAA_23
Motif
Other DBs
NCBI-GeneID:
108843807
NCBI-ProteinID:
XP_018472496
UniProt:
A0A6J0MLY0
LinkDB
All DBs
Position
Unknown
AA seq
1369 aa
AA seq
DB search
MGKKMNRNQNTESSESSRIWASKFLKEFRASGNHSHTFDNSLTNNDRGIIHQMCQKMGLR
SKSSGKGDQRRLTIFKRAPRPSVSDRRNKTTYGNGDADEKKLKRVSFPSEAKPVLQELFT
RYPPCDGDTTGTSLGIYTGRSSGKQRKWKDDFFGKPQMNKDDIQSRAASLSSRLANDKDF
REIFGARTKLPIASFREAITSAVESNQVVLIAGETGCGKTTQVPQYLLDHMWYSKRESCK
IICTQPRRISAISVSERISWERGETIGNNVGYKVRLKSEGGRQSSVVFCTNGILLRVLVG
KGGGSCVPDITHIIVDEIHERDCYSDFMLAIIRDFLPSNPHLRLILMSATLDAERFSGYF
GGCPVVQVPGFTYPVRTFYLEDVLSVLKSEKNHHLISDDSSIPDGKGDIKDEDKVALDEA
IEMAWTNDEFEALLDLVSSEGSHEVYNYRQSSTWLTPLMVFAGKGRVKTVCKLLALGADS
KLKSKEGMTALELAEKEKQFEAAQIIREHADNVQSNSQQAQDLLDKYMATINPEEVDVSL
IVNLMKKICRDSEAGAVLVFLPGWEEISRTKERLLANPYFADSAKYSIICLHSRVPVEEQ
KKVFKRPPQGCRKIVLATNIAESAVTIDDVVYVIDSGRMKEKSYDPYNDVSTLESSWVSK
ANAKQREGRAGRCQPGICYHLYSKLRAASLPEYRIPEVRRMPVDELCLQVKILDPNCNVN
DFLQKLMDPPVDQSIANALTTLKDIGALTPQEELTELGQKFGQLPVHPRICKMIYFSILV
NCLDPALLLACAADTKDPFTMPLGPAERRKAVAAKRELASLYGGHSDHLAIVAAFHRWKD
AKRNGQSREFCSEYFVSPNAMKMLDNMRDKLHGELERHGLIPRNNSDCSLNAHDPGILRA
VVAVGLYPMVGRMCPPSMNNRRSLVETITGAKVRVLSLSNTSSREDDEALIVFDEITRGD
WDVHIRESTALTTIPLLLFAGEIAVAPTESCDADKSDDEEGNNEVETVGDAMDKDKAGGR
PGDKLMLAPENSVKVVVDRWLPFEMTAIEIAQMYILRERLVASILFKVKHPQENLPPHLG
ASMYAIACILSYDGLSRLSVPMVSELESGNTSGLDSMGENLLSNLADGNELLDLVSAPKE
AASAVKEPEKERSRSKKHKSANMEADLSTASDEAASAVEEPVKKRRRSKKRKSAKILDLA
NEQPEANPANESDLGNIEESLPSNLVTGNEQPDTNTAPAEAASAGEEPEKKRSRSSKKRK
SAKNLDLGNIEVNEPSDLANNGNEQTEVKSDRKEKESIPANLTNGNEQSDPNSAQMEADS
AAKTPEKKQSRSKRRKLANDSSSGNNMEENVPSTSGNEQHISSGETEAA
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atggggaagaagatgaatagaaatcaaaacacagaatcctcggaatcctctcggatttgg
gcctccaagttcctcaaggagtttcgcgcctccgggaaccattctcacacgtttgataac
agtcttacgaataacgaccgtggcattatccaccagatgtgccagaagatgggtctccga
tcaaaaagttccgggaaaggggatcaaaggcgtcttaccattttcaaacgtgcacctcgc
ccttcagtctcagacagaagaaataagacaacatatggcaacggagatgccgatgagaag
aagctcaaacgtgtctcatttccatcggaggcgaaacctgttcttcaggagttatttact
cgatatccgccttgcgacggagatactacagggacgtcactggggatatatactggacgc
tcctccgggaaacagcggaagtggaaagatgacttctttggcaaacctcagatgaacaaa
gatgatattcaaagtagggcggcgtctctgagttctagactggcaaacgacaaagatttt
cgagagatctttggagcacggacaaagcttcccatcgcatcctttagagaggccatcaca
tctgcagtggaatctaatcaggttgttcttattgctggtgaaactggctgtgggaaaact
actcaggtgcctcaatatcttctagaccacatgtggtatagtaagcgagaatcttgcaaa
atcatttgcacccaaccacgtcgtatctcagctatttcagtttctgaacgaatttcttgg
gaaagaggtgaaactatagggaacaacgtcggctacaaggtgcggctgaagagcgaaggt
ggaagacagtcatcagttgttttctgcacgaatggcattctgttgagggtgcttgtaggc
aaaggcggtggtagctgtgttcctgatataactcacattattgtggatgaaattcatgaa
agggattgctactctgatttcatgttggcgattataagggacttccttccttcaaatcct
catctccgactgattctaatgagtgctactcttgatgctgagaggttttctggatatttc
ggaggttgtccagttgtccaagtccctggattcacttatccagtgagaaccttttatctg
gaagatgtgctctctgtcctgaaatcagagaagaatcatcatctaatttctgacgactca
agcataccagatggcaagggtgatattaaagatgaagacaaagttgctttagacgaagca
attgaaatggcatggacaaatgatgagtttgaagctctcttagatctggtttcctccgaa
ggaagtcacgaggtttacaattacaggcaatcatcgacctggctaacaccacttatggtc
ttcgctggaaagggcagggttaaaactgtctgtaagctcctcgcacttggcgctgacagt
aaattgaagtccaaggaaggtatgacagcattagaattggccgaaaaagagaagcaattt
gaagctgctcaaataatcagggaacatgctgataacgtccagtccaattctcagcaagca
caagacttacttgataagtatatggcgacaatcaatccagaagaagtagacgtgagtctt
atagtgaatttaatgaagaaaatatgccgtgactcagaagcgggtgccgttcttgttttt
ctacctgggtgggaggaaataagtagaacgaaagagagactgcttgctaatccctatttt
gcagatagtgctaaatatagcatcatatgtctacactcaagggttcctgtagaggaacag
aagaaagtttttaaacgcccccctcaaggctgtcgcaaaattgtgcttgcgacaaatatt
gctgaatcagcagttactatcgatgatgtggtttatgtgatagatagtgggcggatgaag
gaaaagagttatgatccttataacgacgtgtcaacgctagaatcttcttgggtttctaaa
gcgaatgcaaaacagcgagagggacgagcaggccggtgccaacctggaatttgttatcat
ctctattctaaacttcgggcagcctctttacctgaatatagaatccctgaagttaggagg
atgccagtagatgaactctgcttacaggttaagatactggatccgaattgcaacgtcaat
gatttccttcagaaattgatggacccgcctgttgatcaaagcattgcaaatgccttaacc
acccttaaagacattggcgcactgacaccacaagaagagctgacagaacttggacagaaa
tttggccagcttccagttcatcctcggatttgcaagatgatttatttctccatattagtg
aactgtctggacccagcacttcttctggcatgtgcagccgacaccaaggatccatttacc
atgcccttgggaccagcagaaagaagaaaagctgttgccgcaaaacgtgaacttgcgtcg
ctttatggaggccacagtgatcaccttgcgattgttgcagcttttcatcgctggaaagat
gcaaaaagaaatggtcaatctcgggagttctgttctgagtatttcgtctccccaaatgcc
atgaagatgctggataatatgcgtgacaagcttcatggggaactcgaaagacatgggctc
atccctagaaataactcagactgtagtctgaatgctcacgatccgggtattctccgtgct
gttgtagcagtaggattgtaccctatggtgggaagaatgtgcccaccttccatgaataat
agaaggtcactagtagagaccattacgggagccaaagttcgtgtgctctcgctttcaaac
acgtcctctagggaggatgatgaagctttaattgtttttgatgagatcactcgaggagac
tgggacgtgcacataagagaaagcaccgcccttaccactataccgttgttactgtttgcg
ggagagatagctgtggctcctacagagagctgtgatgctgataagagtgatgacgaggaa
ggcaacaacgaagtagaaactgtaggagatgcgatggacaaagacaaagcaggtggtagg
cctggagataaattaatgctcgccccggaaaattcagtcaaggtggtagtggatcggtgg
ctgcctttcgagatgacagctattgaaattgctcaaatgtacatcttgagagagagacta
gtggcatccattttgttcaaggtaaaacatccgcaagaaaatttgccgcctcatctcgga
gcgtctatgtacgcaatagcttgcattctctcatatgatggcctctcaagactttcagtt
ccaatggtgtcggagctcgaatcaggcaacacgtcaggtttagatagcatgggagagaac
ttgttatccaatctcgctgatgggaatgagctacttgacttggtatctgctccgaaggaa
gctgcttcagcagtaaaggaaccagagaaggagagatcaagatccaaaaagcacaaatca
gccaacatggaagctgacttaagcactgcttcggacgaagctgcttcagcagttgaggaa
ccagtgaagaagcgacggaggtccaaaaagcggaaatcagccaaaattttggatttggct
aatgagcaaccagaggctaacccagccaacgaatcggatttgggtaacattgaagagagc
ttgccttccaatcttgttactggaaatgaacaacctgacacaaacactgctccggcggaa
gctgcttcagcaggtgaagaaccagagaagaagcgatcaagaagttcaaaaaagcggaaa
tcagccaagaacttggatttggggaacattgaagtgaacgagccttctgatctagctaat
aatgggaatgagcaaacagaagttaagtcagacaggaaggagaaagagagcatccctgcg
aatcttaccaatgggaatgagcaatccgacccaaactctgctcaaatggaagctgattca
gcggctaagacaccagaaaagaagcaatcaagatccaaaaggcgcaaactagctaacgac
tcaagttcaggtaataacatggaagagaacgtgccttccactagtgggaatgagcaacat
ataagcagtggtgaaaccgaagctgcatga
DBGET
integrated database retrieval system
