Raphanus sativus (radish): 108843995
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Entry
108843995 CDS
T06014
Name
(RefSeq) diaminopimelate decarboxylase 2, chloroplastic
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00300
Lysine biosynthesis
rsz00470
D-Amino acid metabolism
rsz01100
Metabolic pathways
rsz01110
Biosynthesis of secondary metabolites
rsz01230
Biosynthesis of amino acids
Module
rsz_M00527
Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
108843995
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
108843995
Enzymes [BR:
rsz01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
108843995
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Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-GeneID:
108843995
NCBI-ProteinID:
XP_018472678
UniProt:
A0A6J0ML85
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All DBs
Position
3:26269657..26272086
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AA seq
495 aa
AA seq
DB search
MATATHLLSQPSSLRRNLNQYQSNQSPFSRIPVLSLKSTLKPLKRLSVKAAAASSSPNSV
KTATKDSIDQSAFNHCFKKQSDGFLYCEGTKVEDIMESVERRPFYLYSKPQITRNVEAYK
KALEGVSSSVIGYAIKANNNLKILQHLRSLGCGAVLVSGNELRLALIAGFDPTKCIFNGN
GKLLEDLVIAAEAGVFVNVDSEFDLDNIVEASRISGKQVNVLLRINPDVDPQVHPYVATG
NKNSKFGIRNEKLQWFLNEVKAHPNELKLVGAHCHLGSTITKVDIFRDAAVLMVEYIDEI
RRQGFEVSYLNIGGGLGIDYYHAGAVLPTPMDLINTVRELVLSRGLNLIIEPGRSLIANT
CCFVNHVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPPAPEAEVSKFDVVGP
VCESADFLGKDRELPTPPKGAGLVVHDAGAYCMSMASTYNLKMRPPEYWVEDDGSITKIR
HAETFEDHLRFFEGL
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagccactcacctcctctctcaaccctcatctctccggagaaacctaaaccaa
taccaatcgaaccaatctcccttctccaggatcccagttctgtctctcaagtccacattg
aagccactcaaacgcctctccgtcaaagccgccgccgcatcatcatctccaaactccgtc
aaaaccgcgacgaaagactcaatcgatcagtctgcgttcaaccattgtttcaagaaacag
tcagatgggttcctctactgcgaggggaccaaggtcgaggatatcatggagagcgtcgag
agaagacctttttacttgtacagcaagcctcagatcacgaggaacgtcgaggcttacaag
aaggccttggaaggtgtgagctcctccgtcatcggatacgccatcaaggccaacaacaac
ctcaagattctgcagcatttgaggagtttgggatgcggtgctgtcctcgttagtgggaat
gagctaaggcttgctcttattgctggtttcgatcccacaaagtgtatttttaatggaaat
gggaagctgttggaggatttagttatagctgccgaggcaggtgttttcgtgaacgtggat
agtgagttcgacttggataatattgtggaagcttcgagaatctctggtaaacaggtcaat
gttctgctgcgtatcaatcctgatgttgatcctcaggtgcatccatatgtagctaccggg
aacaagaactcgaagtttggtatcaggaacgagaagcttcagtggtttctcaatgaggtg
aaggcgcatcccaatgagcttaagcttgttggtgctcattgccatctaggctctaccatt
acaaaggtggatatattcagagacgctgcggtactcatggtggagtacatcgatgagatc
aggcgtcaaggctttgaagttagctacttgaacattggtgggggcttagggatagattat
taccatgccggagctgtccttcccacacccatggatctcatcaacacggtaagagagctt
gttctgtcacgtggcctgaacctaataatcgagccagggaggtcgttgattgcgaacacg
tgctgtttcgtcaaccatgtaaccggtgtgaagacgaatggaactaagaacttcatagtg
atcgatggaagtatggctgagctgatccgtcctagtctttatgatgcatatcagcacatt
gagttggtctctcctccagcacctgaagcagaggtttccaaattcgatgtagtgggtcct
gtttgtgagtctgctgatttcttggggaaagacagagagcttcctactcctccaaaggga
gctggtctggtggttcatgatgctggtgcatactgtatgagcatggcttccacttacaat
ctcaagatgcgtcctccagaatactgggttgaagatgatggatccatcactaagatcagg
catgctgagacattcgaagaccatttgcgtttctttgaaggtctataa
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