Raphanus sativus (radish): 108844495
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Entry
108844495 CDS
T06014
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B
KO
K07466
replication factor A1
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03030
DNA replication
rsz03420
Nucleotide excision repair
rsz03430
Mismatch repair
rsz03440
Homologous recombination
rsz03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
108844495
03420 Nucleotide excision repair
108844495
03430 Mismatch repair
108844495
03440 Homologous recombination
108844495
03460 Fanconi anemia pathway
108844495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rsz03000
]
108844495
03032 DNA replication proteins [BR:
rsz03032
]
108844495
03400 DNA repair and recombination proteins [BR:
rsz03400
]
108844495
Transcription factors [BR:
rsz03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
108844495
DNA replication proteins [BR:
rsz03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
108844495
DNA repair and recombination proteins [BR:
rsz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
108844495
MMR (mismatch excision repair)
108844495
DSBR (double strand breaks repair)
HR (homologous recombination)
108844495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
SH3_Rv0428c
Motif
Other DBs
NCBI-GeneID:
108844495
NCBI-ProteinID:
XP_018473262
UniProt:
A0A6J0ML91
LinkDB
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Position
3:complement(27044209..27047189)
Genome browser
AA seq
602 aa
AA seq
DB search
MENTVTQDGIASVLSLDSSSAQPQIIVQVVDLKPVGNRYTFNANDGKMKIKAMLPATLSS
EIVSGKIQNLGLIRLVDYTPNDIPGKSGEKYLLVTKCEAVASALDSEVKSEVKASTGITL
KPKQEFVAKSASQIINEQRGNAAPAARMAMTRRVHPLVSLNPYQGSWTIKVRVTNKGVLR
TYKNARGEGCVFNVELTDEEGTQIQATMFNAAAKKFYDTFQKGKVYYISRGQLKLANKQF
KTVQNDYEMTLNEYSEVEEAGSEEMFIPETKFNFVPIDELGPYVNQKELVDVIGVVQSVS
PTMSIRRKSDNEMIPKRDIVLADETKKTVVVSLWNDLATDLGQELLDMADKYPVIAIKSL
KVGDFQGVSLSTISKSNVVVNPDLPEAAKLKSWYDSEGKEMSMSAIGNGMSPSANNGSRS
MYSDRVCLSHFTTNPSLGEDKPVFFSTRAYISFIKPDQAMWYRGCKTCNKKVTEAMDSGY
WCEGCQKKDEECSLRYIMAVKVSDSTGEAWFSAFNDEAEKMIGCTADELNKLKAEEGEGN
EFQTKLKEATWSSHLFRVSVSQQEYNSEKRQRITVRGVAPVDFAAETRLLLQDISKNNKS
SQ
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atggagaacacagtgacccaagatggaatcgcgtcggtactatccctcgattcgtcctcg
gctcaacctcagatcatcgtccaagtcgtggatcttaaacccgttggaaatcgatatacg
tttaatgctaatgatggaaagatgaagatcaaagcaatgttacctgcgactttatcatct
gagatcgtctctggaaaaatccagaatcttggtttgattcgtctcgttgattataccccc
aacgatattccaggcaaatcgggagaaaaatatttgcttgtaacaaaatgcgaggctgtt
gcgtctgcacttgactcagaggttaaatccgaggttaaagcttctacaggcataacgttg
aaaccgaagcaggagtttgtcgccaagtcagcttcacagataatcaatgagcagagagga
aatgctgcaccagctgcgagaatggctatgaccaggagggtccatccacttgtgtccttg
aacccttaccaaggaagttggaccattaaagtccgtgtcaccaacaaaggtgtcttgaga
acttacaagaatgctagaggagaaggatgtgtctttaacgtggagcttactgatgaggaa
ggaacacagattcaggcgacgatgtttaacgcagctgcaaagaagttttatgacacattc
cagaagggaaaggtgtattacatatcgaggggacagcttaagcttgctaacaagcagttc
aagacggttcagaacgattatgagatgactctgaatgagtactcagaggttgaagaagct
gggagcgaagaaatgtttatacccgaaacaaaattcaactttgtacccattgatgagttg
ggtccatacgtgaatcagaaggagctagttgatgttattggtgttgtccaaagtgtttct
cctaccatgagcattagaagaaagagtgacaacgagatgatcccaaagagggatatagtt
ttagctgatgagacaaagaaaaccgttgtggtgtctctttggaacgatctcgcaactgac
ttaggacaagagcttctagacatggctgataagtaccctgttattgcgattaagtctctc
aaagttggagattttcaaggagtttcattgtccacaatcagcaaaagcaacgtggtggta
aatcctgatttgccagaagctgcaaagttgaaatcttggtatgattctgaaggcaaagag
atgtctatgtctgctattggcaatgggatgagcccttctgccaataatggatcaagatcc
atgtattctgacagagtctgtctctctcacttcacaaccaacccttctttaggcgaggac
aagcctgtattcttcagtactagagcttacataagcttcatcaagccagaccaggcaatg
tggtaccgtggttgcaagacctgtaacaagaaagtgactgaagcaatggactctggttat
tggtgtgaaggttgtcagaaaaaggatgaagagtgcagtttaaggtatataatggcggtg
aaagtctctgattcaactggtgaagcctggttttctgcattcaacgatgaagcagagaag
atgattggatgcacagctgatgaactcaataaactaaaagcagaggaaggtgaagggaat
gagtttcagactaaactgaaagaagctacttggtcgtctcatctcttccgtgttagtgtt
tctcaacaagagtataacagtgagaagagacagaggataactgtaagaggtgttgctccg
gttgattttgcggctgaaacaagattattgctccaagacatttccaagaacaacaagtca
tctcagtaa
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integrated database retrieval system
