Raphanus sativus (radish): 108844538
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Entry
108844538 CDS
T06014
Name
(RefSeq) receptor homology region, transmembrane domain- and RING domain-containing protein 4
KO
K15692
E3 ubiquitin-protein ligase RNF13 [EC:
2.3.2.27
]
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rsz04121
]
108844538
Enzymes [BR:
rsz01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108844538
Ubiquitin system [BR:
rsz04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108844538
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
PA
zf-RING_11
zf-C3HC4
zf-C3HC4_2
zf-rbx1
zf-RING_5
zf-RING_UBOX
zf-C3HC4_3
zf-ANAPC11
Prok-RING_4
NUT
zf-RING_16
M3
Pirin_C
zf_RING_Vps8_fungal
zf-C3H2C3
Motif
Other DBs
NCBI-GeneID:
108844538
NCBI-ProteinID:
XP_018473306
UniProt:
A0A6J0MP43
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All DBs
Position
3:complement(4782171..4784325)
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AA seq
436 aa
AA seq
DB search
MTRALILILSLLLIPHLASAKVMLIGKNTSLSFDDIEADFTPMIKKSDQCGVLYVAEPLD
ACSDLVNTVSIPEEGSITSPSYVLIIRGGCSFEEKIRNAQKAGYKAAIVYNNEDYGFLIS
MAGNPSGVVIYGTFVSKSTGEILKRYAGRTDMELWLVPSFETSAWSIMAISFISLLAMSA
VLATCFFVRRHRIRRRRVRLMGGGEFARMGIDTIRRMPTTVFNGVCEEASTSISCVICIE
DYRIGEKLRILPCNHKFHAKCVDLWLGQRRSFCPVCKRDARIININMPPSPTEHTPLLSP
SVTPTSSFLLSSSPSTSLVQSSYDTPSSSSTMQLHTGPMYLSHSRSHTSFQNGSFSGSLP
ISVSRSSVDLRNAVSRGSYNSPRSAHSRYTHILSPGNASTSWVVGSVSSQREHSFTINDS
QRSLSHFASASSLPGC
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgactcgtgctttgattttaatcttatctctgcttctaatccctcacttggcttctgcg
aaagttatgttgatcgggaagaacacatctctctccttcgacgacatcgaagccgacttt
acaccgatgattaagaaatcagatcagtgtggggtactgtacgtagcagagccactcgat
gcttgttcagatttggttaacacagtgtctataccagaagaaggatcaatcacttctcct
tcctatgtgttaatcatccgcggtggctgtagtttcgaagaaaagatcagaaacgcccag
aaggctggttataaagcagctattgtctacaacaatgaagattatggtttcttaatatca
atggctgggaacccatctggtgtggttatatacggaacctttgtgtcgaaatcgactgga
gaaatacttaaaaggtatgcgggtcgtaccgatatggagctgtggctcgtaccgagcttc
gagacttcagcttggtctatcatggctatctctttcatatctcttcttgcaatgtctgct
gtcctcgccacttgcttctttgtccgtaggcatcggattagaaggcggcgtgttaggtta
atgggtggtggagagtttgctcgtatggggatagacaccatcagaaggatgcctactaca
gtctttaacggtgtttgtgaagaagcttcaacgtctatctcttgtgttatttgtattgaa
gactaccgtattggtgaaaagctaaggatcttaccttgcaatcacaagtttcatgctaaa
tgtgttgatttgtggcttggccaaaggagatccttttgtccggtttgtaaacgggatgca
agaattatcaacattaatatgcctccatcaccaacagaacacacacctttgctttctcct
agcgtgactccgacctcgtcttttcttttatcatcatcaccttccacaagcttagttcag
tcatcttatgatactccttcatcttcctcaacaatgcagctacatacaggccctatgtat
ctctcccactctcgctcccatacaagcttccaaaacgggtcattcagtggttcactgcct
atatcggttagccgaagctcagtagatctcaggaatgccgtttcccgaggatcttacaac
tcacctcgctctgcccactcaagatatacgcatatacttagcccggggaatgcatcaacg
agctgggttgttgggtcggtatcaagccagcgcgagcattcatttactattaatgactcg
caaaggtctctctctcactttgcctctgctagttctctaccaggctgctaa
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