KEGG   Raphanus sativus (radish): 108845834
Entry
108845834         CDS       T06014                                 
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 isoform X1
  KO
K18643  katanin p80 WD40 repeat-containing subunit B1
Organism
rsz  Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:rsz04812]
    108845834
Cytoskeleton proteins [BR:rsz04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulin-binding proteins
    Microtubule severing proteins
     108845834
SSDB
Motif
Pfam: WD40 Katanin_con80 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 WDR55 EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML Beta-prop_SCAP ANAPC4_WD40 Beta-prop_TEP1_C Beta-prop_DCAF4 WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_SPT8 Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_EIPR1 Beta-prop_IFT122_1st WDR90_beta-prop_4th eIF2A Beta-prop_HPS5 Beta-prop_RIG_1st Beta-prop_Vps41 Beta-prop_WDR19_1st WD40_RFWD3 Beta-prop_VPS8 WDR54 PAN2_N
Other DBs
NCBI-GeneID: 108845834
NCBI-ProteinID: XP_018474524
UniProt: A0A6J0MQV4
LinkDB
Position
3:complement(26933886..26939407)
AA seq 836 aa
MTTKRAYKLQEFVAHSAAVNCLKIGRKSSRSLVTGGEDHKVNLWAIGKPNATLSLQGHSS
GVDSVTFDASEGLVAAGAASGTIKLWDLQEAKIVRTLTGHRSNCISLNFHPFGEFFASGS
RDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNVVKVWDLTAGKLLHE
FKSHEGQIQSLDFHPHEFLLATGSADKTVKFWDLETFELIGSGGTETTGVRCLTFNPDGK
SVLCGLHESLKIFSWEPIRCHDGVDVGWSNLSDMNVHEGKLLGCSYNQNCVGVWVVDLSQ
TEPMSRGTTQSNFHPERGRDQPVLNDNSSKVILRNGSQKVNPSLKETKSHGRSSVPQNPD
PSPKETKSTGRSSVSQSSDPLIKEQPKPLGRLSVNHSSDAVKESLTSSSTGSTSGSPHRV
TLTNSPKVASGVSTVVVSTAAASKRNNLKANLRVVNKGDYFPVIVPRTDHPVIEQAVESR
AELDIIGRTMPYSLQSKAADSRRLSSIRNELVDPPTDSLLERSQSQQPIESSSLQDGNTF
TSEECGAWDTAERKNKDNRYNRGFGRFNSQSLLRSPPRNHDENSDMNGFNANRDQSPTES
RRGGRLHSLSLYRERRGRIFNLESHVSSSSGGNMTTPNTRPSNMLINQRGNHVRLDEGIT
SDSEEDKAAEVMGQHDQFVSSMQSRLAKLQVVRRYWERNDVKNSISSIEKMADNAVVADV
LVIITERTEILTLDTCTSLLPLLTALLGSNMDRHLSVCLDLLLKLVRIYGSQIYSSLSAP
SSVGVDIEAEQRMERYSRCFVELEKIKACLPSLERRGGLVAKTIHELNLIFQEVSS
NT seq 2511 nt   +upstreamnt  +downstreamnt
atgaccaccaagcgtgcttacaagctccaggagtttgtggcacattctgctgctgtgaac
tgtcttaagattgggaggaagtcctctaggagtcttgtaactggtggggaagatcacaag
gtcaatctttgggctattggtaagcccaatgccactctgagcttgcaagggcactcgagc
ggggttgattcagtaacatttgacgcttcggaaggattagtagcagcaggagctgctagt
ggtacgatcaaactttgggatctccaggaggcaaagattgtgaggactctcactggtcac
aggtcgaattgcatatccttgaattttcacccgtttggtgagttttttgcttctggttct
cgagacacgaatcttaagatatgggatataagaaagaagggttgcatccatacttacaaa
ggccacactcgaggtgtcaatgtactcagattcaccccagatggtcgttgggttgtatct
ggtggagaagacaatgttgtcaaggtgtgggacttgacagctggaaaactgttgcacgag
ttcaagagtcatgaagggcaaatccagagtctagattttcatccccatgagtttcttctg
gcaacaggttcagccgataagactgtaaaattctgggaccttgaaacattcgagcttatt
ggttctggtggaactgagactactggggttcgttgcttgacctttaatccagatggaaag
agtgtcctttgtggattgcatgaaagcctcaagattttctcatgggagccaataagatgt
catgatggagtggatgttggatggtcaaacttatcagatatgaacgttcacgagggaaag
cttcttggttgctcatataatcaaaactgtgtaggcgtgtgggttgtagacctctcgcag
actgagcctatgagtagaggcaccactcagtcaaactttcatccagagagaggcagagat
caaccagttctgaatgataacagctcaaaggttattctcagaaatggttcccagaaagtg
aatccttcattgaaagaaacaaagtctcatggaagatcatcagttcctcaaaacccggat
ccttcaccaaaggaaacaaagtctactggaaggtcatcagtatctcaaagttcagatcct
ttgataaaggaacaaccaaagcctcttggaaggctgtcagttaatcatagttcagacgca
gttaaagagtcattaacctcgtcatccactggaagtacatcaggctctcctcatagggtc
acattaacaaattctccaaaagttgcttctggtgtttctacggttgttgtctctactgct
gcagcctcaaagaggaataacttaaaggcaaatcttcgagtagtcaataaaggggattat
ttcccagtaattgtccccagaacggaccacccagtgattgagcaggcagttgaatccaga
gcagaacttgacatcattggaagaactatgccatattcgttgcagtccaaggcggctgat
tctcgaaggctgtctagcatcagaaacgagctggtggatccaccaactgattcacttctt
gaaaggtctcagtctcagcagcctatagaatcaagcagtttacaggacggaaatacgttt
actagtgaagaatgtggcgcatgggatacagctgagagaaaaaataaagacaacagatac
aacaggggatttggaaggtttaattcacagtctctactaagatctcctccaagaaatcac
gacgaaaattctgacatgaatggctttaacgcaaatagagatcaaagtcctactgaaagt
cgaagaggaggaagactgcattccctatctctatatagggaaagaagaggaagaattttc
aacttggagagtcatgtttcgagttcttctggtggaaatatgactacaccaaacactcgc
ccttccaatatgctcatcaatcagagaggaaaccatgtacgacttgatgaaggaatcact
tctgatagtgaagaagataaagctgcagaggtaatggggcagcacgatcaatttgtcagc
tctatgcagtctcgtttggctaagttacaggttgtccgaagatattgggaaagaaacgat
gttaaaaactcaataagttcaatagagaagatggctgataatgctgtcgttgcggatgta
ttggttataatcactgagagaactgagatattgacactggatacatgtacctctcttctt
ccccttttgacagctcttttggggagtaacatggatagacatttgagtgtctgcctagac
ttgctgcttaaactggtaaggatctatgggtcacaaatttactcgtcgctgtcagctcca
tcatctgttggtgtagatattgaggctgaacaaaggatggagcggtacagtcgttgcttt
gttgaactcgagaaaatcaaggcttgtcttccctctttagaaagaagaggaggattagtg
gcgaagactatccatgaactcaacttaatattccaagaagtttcgtcatga

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