Raphanus sativus (radish): 108846304
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Entry
108846304 CDS
T06014
Name
(RefSeq) probable pectate lyase 19
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108846304
Enzymes [BR:
rsz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108846304
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
108846304
NCBI-ProteinID:
XP_018475029
UniProt:
A0A6J0MSA1
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All DBs
Position
3:25359160..25361404
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AA seq
483 aa
AA seq
DB search
MQQILKKMVMARLLKLMFMFFCIAGLIPTIRAETFDELDEYWLQRGDEAREFTLQAYHSD
PYEILDHFHERHYDNSTDVAPTEEETSAKPEEVENEVIDMVGDHNSTNSTRRSLKGKGKG
KWSKLKGPCTASNPIDKCWRCRKNWSKRRKRLVKCVRGFGHMTVGGKHGRIYVVTSNLDE
DMVNPEPGTLRHAVIQKEPLWIIFKNDMSIRLNQELLINSFKTIDARGANVHVAHGAGIT
MQFVRHVIIHGLHIHHISESSGGMIRDSADHFGMRTRADGDGLSIYGSSNIWIDHVSMSQ
CQDGLIDAIVGSTAITISNSHFTHHNDVMLLGAQNTYDLDKKMQVTVAYNHFGKGLVQRM
PRIRWGFVHVVNNDYTHWELYAIGGSQSPTILSQGNRFIAPPHLPHYREVTKRDYAPEEE
WKHWNWRSEKDIFMNGAYFRQSGDPNYETDHTRRNMIKPKNGYAVSKLTKYAGALDCRVG
RRC
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgcaacaaatattaaaaaagatggttatggctaggctgttgaagttgatgttcatgttt
ttttgtattgccggtctgattccgaccatacgagccgagacgtttgatgagttggacgaa
tattggctccaacgaggcgatgaagcccgagagttcactcttcaagcttatcattctgat
ccttacgaaatcctcgatcactttcacgaacgtcattacgacaactctactgatgttgcc
ccgaccgaggaagagaccagcgcaaagcctgaagaggtggaaaatgaggtcattgatatg
gtcggagatcataactcgacgaacagcacgaggcgaagcttaaaaggtaaaggcaaagga
aaatggagtaagctcaagggaccgtgcaccgcaagtaacccgatagataaatgctggcgt
tgccgtaagaactggtctaagcgtcgcaagaggcttgtcaaatgtgtacgcgggttcgga
cacatgacggtcggcgggaaacacggacgcatctacgtggttacgagcaacctcgacgag
gacatggtgaaccctgaacccgggacgttgcgtcacgccgtgatccagaaggaaccactc
tggatcattttcaagaacgatatgagcattcgtctaaaccaagagctcctgattaacagc
ttcaagacgatcgatgcgcgaggagctaacgtccatgtcgcgcatggcgcggggatcacg
atgcagttcgtgagacatgttattatccatggtttgcatattcaccacatttctgagagt
agcggcggtatgatccgtgactcggcagaccattttggaatgaggactagagccgatgga
gacggtttatctatatacggttcgtctaacatttggattgaccatgtctccatgtcgcaa
tgtcaagatggactcattgatgccattgttggatccactgccattacaatctccaactct
cacttcactcaccacaacgatgtgatgttgcttggtgctcaaaacacttatgatttggac
aagaagatgcaagtgacagtagcttataaccatttcggtaaaggacttgtgcagaggatg
ccaaggatcaggtggggatttgttcatgttgtgaacaatgactacactcattgggagctt
tacgctatcggaggcagtcaaagtccgacaattctcagccaaggaaaccgattcatagct
cctccacacttgcctcattacagagaggtgacaaagagagactatgctcccgaagaagag
tggaaacactggaactggagatccgaaaaagatatattcatgaatggagcttatttcaga
caatctggagatcctaattacgaaactgatcatacaagacgtaacatgattaaaccgaaa
aatggatacgctgtttcaaagctgaccaaatacgcaggagcccttgattgcagagtcgga
agacgctgttag
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