Raphanus sativus (radish): 108846575
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Entry
108846575 CDS
T06014
Name
(RefSeq) exopolygalacturonase-like
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Module
rsz_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108846575
Enzymes [BR:
rsz01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
108846575
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
108846575
NCBI-ProteinID:
XP_018475298
UniProt:
A0A6J0MTW8
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Position
3:complement(18658673..18660288)
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AA seq
407 aa
AA seq
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MASRFLILSVLSLFFFLLAVSSAPTSEYYKGDNVFDVRNYGARGDGKTDNAIAISKAWND
ACQWSGGSSTVYIPLGTFYLSQVTFAGPCKSYITFIITGTLTAPRDPDVIKQEAWIEFRY
VDNLTVTGGGLLDGQGDYSWSLNDCNKNPKCRTLAINIGFAFVRSSRINGLNSINSKMGH
FNLFAVEDFNITGVTITAPGDSPNTDGIKIGRSKDMHLYNVTIATGDDCIAILDGTTNLD
ISDVRCGPGHGISVGSLGRYKDEKNVEGLTVRNSIINGTTDGLRIKTYAKSVSAISVSNF
LYDNIQMVNVRNPIVIDQQYCPNGQCDSPGKYESHVQIRDVTYNKIWGTSTSQAALNMQC
SKTFPCQGVELSNINLMYNGGDGSAMALCENVGGSVRGKIVPAGCHI
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctaggtttctgatcttgtctgtcttgtctctcttcttcttcttactcgccgtc
tcaagtgctcccacgagtgaatattacaaaggagataacgtcttcgacgtcagaaactac
ggtgctcgcggcgacggtaaaaccgacaacgctattgcgatttcaaaggcctggaacgat
gcttgtcaatggagtggtggaagctcaacggtctatatacctctcggaacattctatctc
agtcaagtaacgttcgctggcccttgcaaaagttatatcacttttataatcaccggaacc
ttgacggctcctcgggatcctgacgtcatcaaacaagaagcatggatcgagttccggtac
gtagacaatctcaccgttacaggaggagggttgcttgatggtcaaggtgattactcttgg
tccctcaacgattgtaacaaaaaccctaagtgtcgtacactagctatcaacatagggttt
gcgttcgttcgatcgtcgaggatcaacggtctaaattcgatcaacagcaaaatgggtcac
ttcaacttattcgcggtcgaggattttaacattaccggcgtgactatcacggctcctgga
gatagccctaataccgacggtatcaagattggtagatccaaggatatgcatctatacaac
gtcactattgcaaccggtgacgattgcatcgcaatacttgacggaactaccaatttggat
atctctgatgtcaggtgcggaccagggcacggtattagtgtcggaagcctcgggaggtat
aaagatgagaagaacgttgagggcttaaccgtgagaaactctattatcaacggtacaacc
gacggtttacggatcaaaacatatgctaagtcggtctcggccatttcagtttcgaacttc
ttgtacgataatatccaaatggtcaacgttagaaaccctatcgtcatcgaccaacagtat
tgtccaaatggacaatgcgacagtcctggaaagtatgagtctcatgttcagatcagagac
gtgacgtacaacaaaatatggggaacttcgacgagccaagcggctttgaacatgcagtgt
agtaaaacgtttccttgtcaaggcgttgagctctcaaacatcaacttgatgtacaatggg
ggggacggttcggccatggccttgtgtgagaatgttggtggttcggttcgtgggaagatt
gtacctgctggttgtcatatttga
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