Raphanus sativus (radish): 108846807
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Entry
108846807 CDS
T06014
Name
(RefSeq) probable polygalacturonase At2g43860
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Module
rsz_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108846807
Enzymes [BR:
rsz01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
108846807
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
108846807
NCBI-ProteinID:
XP_018475510
UniProt:
A0A6J0MSR3
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Position
3:12907532..12909273
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AA seq
409 aa
AA seq
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MVYKTSCLFLPLALIFLDFIIISSLAKPIPTTLINVLTYGAKADGSTDSTKAFLAAWQVA
CASVNPSTIIVPNGRFLVNNLVFQGKQCTDAPISIRIAGSMIAPEDYRVIASSEQWIWFE
SVTDVSIYGGMLDAQGSSLWNCKNNGGSNCPTGAKTLLFSGSSNININGLTSINSQKFHI
VINGCNNVNIDGVKVSAAADSPNTDGIHIQASHSVSITNSRIGTGDDCISIGPGSTHLSI
QGIQCGPGHGISIGSLGIAEDEQGVENVTVSNVDFTATSNGVRIKTWGKNSKSFARNIVF
QHINMKMVKNPIIIDQHYCFYKPCPNQESGVEVSNVRYEDIHGTSSTDVAVNLDCSKEKP
CTGIVMDNVNLALQLVNRPAQASCSNGNGLANDVVIPFAPCLKRDILMT
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atggtttataaaacatcatgtctttttcttcctttggctctcatatttcttgatttcatc
ataatctcatcattagccaagccgattccaaccacattaatcaacgttttaacctacgga
gctaaagcagatggctcaacagactcaaccaaagccttcttagccgcatggcaagtcgcg
tgtgcctctgttaatccgtcaactattatcgtaccaaacggacggttcttggtcaacaac
cttgtgttccaaggcaagcagtgtacggatgctccaatatctattcgtatagctggatca
atgattgctcctgaagattacagagttatcgcaagctcagaacagtggatctggttcgag
agtgtcactgatgtttcaatctatggtggaatgcttgacgcccaaggttctagtttgtgg
aactgcaagaacaatggtggtagcaattgccctaccggtgccaagactctgttgtttagt
gggtcgagcaacatcaatatcaacggtttaacgtcgataaacagccagaaatttcatata
gttatcaacggctgcaataacgtgaacattgacggcgttaaagtttctgctgctgctgat
agccctaacaccgatgggattcacatccaagcatctcactcagtcagtatcactaattca
agaattggaactggtgacgattgcatctccatcggtccaggatccactcatctttccata
caaggcatccaatgcggtccaggccacggcatcagtattggaagccttgggatagcagag
gacgaacaaggagtggagaacgtgacggtgagtaacgtggatttcacggcaacaagtaat
ggagttaggatcaagacgtggggcaaaaatagcaagagttttgctagaaacatcgttttt
cagcatattaatatgaagatggtcaagaacccgatcatcatagaccaacactattgtttt
tacaaaccttgccctaaccaggaatctggagttgaagtatcaaatgtgagatatgaagat
atacacgggacatcgagtacggatgtggcggttaatttggattgcagtaaggagaaacca
tgtaccggtattgtaatggacaatgtgaatctcgccttgcagctggtgaaccggccggct
caggcttcttgtagtaatggaaacggattagctaacgatgtcgtcatcccgttcgctcct
tgtctgaagagagacatacttatgacatga
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