Raphanus sativus (radish): 108847026
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Entry
108847026 CDS
T06014
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108847026
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rsz03041
]
108847026
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108847026
Spliceosome [BR:
rsz03041
]
Complex C
Other components
Step II factors
108847026
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11_2nd
KH_DEAH11
KH_DEAH11_1st
RRM_DEAH11
Helicase_C
IBR
OB_NTP_bind
DEAD
AAA_22
IBR_1
zf-RING_UBOX
zf-C3HC4_2
IBR_2
AAA_19
zf-RING_2
zf-RING_5
Helicase_RecD
ResIII
KH_SLS1_1
HA2_N
ABC_tran
AAA_16
AAA_29
Motif
Other DBs
NCBI-GeneID:
108847026
NCBI-ProteinID:
XP_018475697
UniProt:
A0A6J0MTB7
LinkDB
All DBs
Position
3:complement(26641929..26647860)
Genome browser
AA seq
1767 aa
AA seq
DB search
MSSSLPPADGGRSATNRHSSFPSASTNRRNFLSPPLNHRHTHHNHHQYPNSSFPPNQRRD
RPPSPPNFVVQLLHPRISPASAGSGDAAKPSFSVRKQVISTLASLIGIPVDSIHVPQFGC
VAGSFRFRQWVDALSAVVSLWEYRLQGKTLLVPELVANVTVPSDVDELRDRLRALFSAHV
TSLLDNGDCVKKVRAEIEEKSRQVESFSSKRGLKLEAFEKKKALEAERDLIVKRLEEFKN
GMKSIVRFLEGSVPDGEKDDVAVFSLEGAYDWPRIHSLIRRECRRLEDGLPIYAYRRNIL
KRIHGEQVMVLIGETGSGKSTQLVQFLADSGVAASESIVCTQPRKIAALTLADRVREESN
GCYEENSVRCTPAFSSTEEISSKVVFMTDNCLLQHYIKDRSLSGVSCVIIDEAHERSLNT
DLLLALLKDLMCRRIDLRLVIMSATADAYQLSDYFFGCGILCVTGRNFPVEIIYSPSDAE
GTSVAGRIAPYADDVVKKAVEVHKTEEEGTILAFLTSQAEVEWACERFIAPSAVALPLHG
KLSFEEQFRVFQNHPGKRKVIFATNIAETSLTIPGVKYVIDSGMVKESKYEPKTGMSILR
VCRVSQSSARQRAGRAGRTEPGRCYRLYSKHDFESMNLNQEPEIRRVHLGVALLRILALG
VDNAADFDFVDAPVPEAITMAVRNLVQLGAVVEKNGVLELTQEGHCLVKLGLEPKLGKLI
LGCFRYRMGKEGIVLAAVMANASSIFCRVGSLDEKMKADCLKVQFCNPNGDLFTLLSVYK
EWASLPRERRNKWCWENSLNAKSMRRCEDTVKELEICIERELSLVSPSYWAWNPTQGNKH
DKHLKMVILASLAENVAMYTGYDQLGYEVALTGQQVQLHPSCSLLAFGQKPNWVVFGELL
SVVDQYLVCVTAFDFEALSMLDPPPPFDASHMDEWRLRVEKVAGCSSTLLKRFCGKSNHG
LLSIVSRARSLCVDERISIQVDVDQNEILLYAPPHDMDKVSTLVNDALECEKKWMRNECL
EKYIYNGRGQVPMALFGSGAQIKHLEVDQRFLTVDVFYYGDSFVDDREVLRFLEKKIDGC
FCSIHKLVGNKQDCDEKDKWGRITFLTPETAMKATEIQKFDFNGSVLRLFPSLATGGGMF
KMPSFPSVNAMIRWPQRESTGRGVLKCPSGDVHSIFAGTSDIVIGTRYVRFETDQRFSDS
ILITNIDSGILEADVLDALEFYTGRTDLEFFLLRRKSVRCPPPAVCADMLHKRIYACMSS
SSSPEPNCVQVRVFEPKESDYFMRALITFDGRLHLEAAKALQELDGEVLPGCLSWQKIKC
EQKFQSSIICPASVYNIVRRQLNAKLTSFERQRGGTWHLEPTHGGAYRVRISAYATKPIS
EMRRSLEELVRGRPINHPGLTPRVLQHLSSRDGVILMRRIQHETETYILLDRHSLTVRIC
GSEEKIAAAEQELIWSLLAYHDRQQLEIRLRGPKLRPDLMKEVVNRFGPDLQGIKEKVNG
VDLKLNTRYHVIQVHGSIEMRQEVEKIVYELAQESSEPGGKPDDIEVECPICLCEVDDGY
TLEGCSHLFCKACLLEQLEASMRNFDAFPILCSHTDCGSPIVVADLRALLSQEKLDELFR
ASLSSFVTTSDGNFRFCSTPDCPSVYRVAGPRESGEPFICGACNAETCRKCHLEYHPYIT
CERYKLFKEDPDMSLKDWAKGKNVKECPFCKSTIEKSEGCNHVLCRCGKHICWVCLDFFT
HQEPCYEHMRAVHGGIGIFDGLGIPML
NT seq
5304 nt
NT seq
+upstream
nt +downstream
nt
atgagcagttcactccctcccgccgacggtggaagatcggcgactaatcgccactcctcc
ttcccctcagcttcaaccaaccgtcgaaacttcctctccccgccgctcaaccaccgacac
actcaccacaaccaccaccaataccctaactccagtttcccgccaaatcagagacgcgat
cgacctccctcgccgccgaatttcgtcgtccagcttctccacccgagaatctcccccgcc
tccgccggcagcggcgacgccgccaagccgtctttctcggtcaggaagcaagtgatcagc
accctcgcctcgctgatcgggatcccggtggattcgatccacgtgcctcagttcggatgc
gtcgccgggagtttccgtttccgtcagtgggtcgacgcgctctccgccgtcgtctctctc
tgggagtaccgcctccaggggaagacccttttggtccccgagctggtcgctaacgtcacg
gtcccgtctgacgtggacgagcttagagacaggctccgtgctcttttctccgctcacgtg
acttcccttcttgacaacggagactgcgtcaagaaggtgagggcagagatagaggagaag
tctcgtcaagtcgagtccttttcgtccaagagaggtctcaagttggaagctttcgagaaa
aagaaggctcttgaggctgagagagatttgattgtgaagcgccttgaagaattcaagaat
ggtatgaagagcattgtgaggtttctcgaaggttctgtgcctgatggagaaaaagatgac
gtggcggtgtttagtttggaaggagcttatgattggccacgtattcatagcttgatccgc
agggagtgtcgtaggctagaggatggcctgcctatctatgcttacaggcggaatattttg
aagaggattcatggcgaacaggtaatggtattgattggagaaaccggttcagggaagagc
actcagttagttcagttccttgctgattccggagttgctgctagtgaatcgattgtttgt
acacagccaaggaaaatcgctgccttgacattagctgatcgggtcagagaagaaagcaat
ggttgttacgaggagaactctgtccgctgcactccagctttctcttctaccgaggagatt
agttccaaagtcgtgttcatgacggataactgtctgcttcaacactacattaaagatcgg
agcttgtctggagtttcttgcgttattattgacgaagctcatgagagaagcttgaacacg
gaccttcttctggcgttgcttaaagatctgatgtgcagaaggatcgacttgaggcttgtc
atcatgtctgctacggctgatgcttaccagctctcagactatttctttggctgtgggatt
ctttgtgtcaccggaaggaactttccggtggagattatatattcccctagtgacgcagaa
gggacttctgttgctggacgcattgctccgtatgctgatgatgttgttaagaaggcagtg
gaggttcataagacagaggaagagggaacaatccttgcgttcttgacttcccaagcggag
gttgaatgggcgtgcgaaaggtttatagctccatctgcagttgctttgcctttgcatgga
aagctttccttcgaggagcagtttagggtgttccagaaccatcctgggaaacggaaagtg
atctttgccacaaatattgcagagacctctctgactattcctggcgtcaagtatgtaatc
gattccgggatggtgaaagagagcaaatatgaacctaagactggtatgagcatcctcagg
gtttgccgagtcagtcagagttcagctcggcaacgtgctggtcgtgccggaaggacagaa
ccggggagatgttacagactttactcgaaacacgattttgagtcgatgaatctcaatcag
gaacctgagattcggagggttcatcttggtgtagcgctgttgaggattcttgctctgggt
gtagacaacgcagctgatttcgactttgttgacgcgcctgtccctgaagccatcacaatg
gctgtcagaaatcttgttcagttgggtgcagtcgttgagaagaatggtgttcttgagtta
acacaggaagggcactgtttagtcaagcttggtctggagccaaagcttggaaagttaatt
ttaggctgcttcagatacagaatgggcaaagaggggattgttcttgctgctgtcatggct
aatgctagtagtatattttgcagagttggcagcctcgatgaaaagatgaaagctgattgc
ctaaaggtacaattctgcaaccctaatggagacttgttcactcttctttcggtgtacaaa
gaatgggcatctctgccgcgagagagaagaaataaatggtgctgggaaaatagcttaaat
gccaaatcaatgaggagatgtgaagacacagtcaaggagttggagatatgcatcgagaga
gaactttctcttgtcagtccaagttactgggcttggaatccaacccagggtaataaacac
gacaagcatttgaaaatggttatacttgcatctcttgctgaaaacgtggcgatgtacact
ggctatgatcagcttgggtatgaggtggcattgactggtcaacaagttcagttgcatccg
tcctgttcattgctagcgtttggacagaagccaaactgggttgttttcggtgaacttcta
tcagttgtcgaccagtacttggtatgtgtaactgcgtttgattttgaagctttgtctatg
cttgatccacctccaccttttgatgcatctcatatggatgagtggaggctccgagtggaa
aaggtggctggttgtagcagcactctgctaaaaagattctgtgggaaatctaaccatggt
ctgctttcgattgtttctcgtgccaggtcgctttgtgtggatgaaaggattagtattcaa
gttgatgtcgatcagaatgagattctactgtatgcgcctccccacgatatggacaaagtc
tcgaccctagtgaacgatgcgttggagtgtgaaaagaaatggatgcgtaacgaatgcttg
gagaagtatatatacaatggtcggggacaagtacctatggcactttttggatctggtgct
cagataaagcatcttgaagttgatcagagattcttgacagtcgatgtattttattatggc
gacagttttgttgatgacagagaggttctgaggttcctggagaagaagattgatgggtgt
ttctgctctatccataagctcgttgggaacaagcaagactgtgatgagaaggataagtgg
ggtaggataacctttctcactccggaaactgctatgaaggcaacagaaattcagaaattt
gatttcaatggatcggtgcttagactatttccgtcactggcaactggtgggggaatgttc
aagatgccttctttcccttctgttaatgctatgattcgttggccgcagagggaaagcact
ggtagaggcgttcttaagtgcccatccggtgacgttcacagtatatttgctgggacctct
gacatagtgataggaacaagatatgtccggtttgagaccgatcaaaggttcagtgattca
atcttgattactaatattgactcaggtattttggaagcagacgttttagatgcgttggag
ttctatacggggagaacagatttggaattttttctattgagaaggaagagtgtgcggtgt
ccacctcctgctgtctgtgcagatatgctgcataagagaatatatgcgtgcatgtcatcc
agcagcagtccagagccaaactgtgtccaagtcagagtttttgaaccaaaagaatcagat
tacttcatgcgagccttgattacttttgatgggaggttacacttggaagctgcgaaagct
ttacaggagttagatggagaggtgctacctggatgcctttcatggcagaagataaaatgc
gagcaaaagttccagagctctattatctgtcctgcttctgtctacaacatagtcagaaga
caactgaatgctaagttaacaagcttcgagagacaaagaggaggtacgtggcatctggag
ccaactcatggtggtgcttaccgtgttagaatatctgcttatgcaaccaaacccatctcg
gagatgcggagatctcttgaagaactcgtaagaggaagacccataaaccatccaggctta
accccaagggtcttgcagcatctttcttccagagatggtgttattctgatgcggaggatc
caacatgagactgaaacttacattctattagacaggcacagtctcacagtacgcatttgt
ggatcagaagagaagattgctgcggctgaacaagaactgatctggtcacttctggcctat
cacgataggcagcaacttgaaatccgcctccgaggtcctaaactccgtcctgacctcatg
aaggaagttgtgaaccggtttggtccagacctccaaggtatcaaagagaaggtaaatggc
gtggatctcaagctcaacacccggtaccatgttattcaggttcatgggagcatagaaatg
aggcaggaagtagaaaagattgtgtacgaacttgcacaggaaagtagtgaaccgggcggg
aaaccagatgacattgaagttgaatgccccatttgcttgtgtgaggttgatgatggctac
actctcgaaggatgctcacacctcttctgcaaagcttgtctgttggaacagctcgaggcg
tcgatgagaaacttcgacgcatttcccatactttgctctcacacggactgtggatctcca
atagtagtcgctgatttgagagccctcttatcacaagagaagctagatgagctcttcaga
gcatccctgtcctctttcgtaacaaccagtgatggtaacttccggttttgctccacacct
gattgcccttccgtttaccgtgtagccggtcctcgagaatcaggggagccgttcatctgc
ggagcttgtaacgcagagacatgcagaaagtgccacctggagtatcacccgtatatcact
tgcgagaggtacaaactgttcaaggaggatccggacatgtcgttgaaagactgggcaaag
ggaaagaacgtgaaggagtgcccgttttgcaagtcgacgatagagaaatctgaagggtgt
aaccacgtgctgtgccggtgcgggaagcacatttgctgggtctgtttagacttcttcact
catcaagaaccttgttatgagcatatgagagcagtccatggtggaataggcatcttcgat
ggcctcggcatccccatgctttga
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integrated database retrieval system
