Raphanus sativus (radish): 108847347
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Entry
108847347 CDS
T06014
Name
(RefSeq) E3 ubiquitin-protein ligase UPL4
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108847347
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rsz04121
]
108847347
Enzymes [BR:
rsz01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
108847347
Ubiquitin system [BR:
rsz04121
]
Ubiquitin ligases (E3)
HECT type E3
108847347
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
Arm
Rsa3
Motif
Other DBs
NCBI-GeneID:
108847347
NCBI-ProteinID:
XP_018476070
UniProt:
A0A6J0MUC0
LinkDB
All DBs
Position
3:complement(28067593..28074758)
Genome browser
AA seq
1528 aa
AA seq
DB search
MENRGQKRMEDVEELPADKRACNSQDSRTSTSSSDSSAQSQSQEAAAAAANGASSGQENS
DADMDTSSSDSPSSSEGEQEQEQDREEDSDYGTCDSDDDHDDEEDPRHQELQDIQYGRSS
EDQQKLSSLVSRLSEEVDPSLQLIGLTELCEVLSFCTEDSFSPRVMADTLSRVLVKLANH
ESNADIMLLAIRAITYLSDVYPPSVAFLVKHETLPALCQRLLTIEYLDVAEQCLQALEKI
SKDNPVACLNAGAIKAVLSYIDFFSTSLQRVAVSTVVNICRELSSESPSPIMDAVPILCN
LLQYEDRQLVESVAICLTKIADQVSQSPEMLDQLCSHQLIHQSIHLLNLNGRTTLSQPVY
NGLIRLLRKLSSGSTLAFRTLYELNIGYRLKEIISTYDISHSVSSTHPNNTCSNQVHEVL
KLVIELLPSSLVEDNQLALEKESFLVNQPDLLQQFGADMLPVLIQVLKSGANAYVSYGCL
SAIHKLTCLSKSADFIDLLKTANILSVLAGILSRKDHHVVVVALQIAEVLLEKYRDAFLN
SFIREGVFFAIEALFKTDRGQQNPVSADVSQKPVSKENVKCSLCQIFERSSSSSSQTCKI
EKDSVYILATRIKERFFGPEVFDSQKGLTDVLQNLKHVSSALNDLMNVPVDARALHTEKF
FSIWNQIIERLNGKESVSTFEFTESGVVKALANYLSNGLHQRNFSKGDPECDSLPFVGNR
FEVFTRLLWSDGEATSSVLIKKLQNSLSSLENYPTVLSQFLKQRNSFATVPNGRSTSYPI
LRVRFVRAEGETCLRDYSQDLVTVDPLCYLDAVDQYMWPKVHLKPLDSVEAKDQAMECQS
SQLQSTSISCQGEGSSHMEIDIPNASQGSQEEDQEQLTDSGEENTSEENNTSSSEEEDAL
AEEDPLPRLLFRLEGIELDRSLTVYQAILLHKLKSGSETTNDSKLSGTHTITYERAPQLA
ESHENQILLGSIMNNDEYHSFLSYLFAHTLGLRYMGTNPPAYDILFLLKSLEAMNRYLFH
LICHERINAFGEGRLETLDDLRVEVRPVPYTEFVSSKFTEKLEQQLRDSFALSTCGLPPW
FNDLMGSCPFLFSFEVKSKYFRLAAFGSQKVHHHPQHLSSSSGHGEGRPATGSLPRKKFL
ACRQNILESAAKMMELHGSQKVVIEVEYSEEVGTGLGPTLEFYTLVSRAFQDPDLGMWRS
DRSSFAGKPREGSGSLVAPSGLFPRPWSDTSTAFPDVLQKFVLLGTVVAKALHDGRVLDI
PFSKAFYKLVLGQELSSFDIHFIDPELCKTLVELQALARRKKVFSESQSDARAAAKCDLS
FRGTKIEDLCLEFTLPGYTDYVLAPHSANDMVNLDNLEEYIKAIVNATVCNGIQKQVEAF
RSGFDKIFPIEHLEIFNEEELETLLCGERDLFNMNEVLDHVKFDHGYTSSSPPVQNLLEI
LQEFDKEQQRAFLQFVTGCPRLPPGGLASLNPKLTIVRKHGSDSSETDLPSVMTCANYLK
LPPYSSKENMKEKLIYAITEGQGSFHLS
NT seq
4587 nt
NT seq
+upstream
nt +downstream
nt
atggagaacagagggcagaaacgaatggaggatgtggaggagctacctgctgataagaga
gcttgtaactcacaggactccaggacaagcacatcttcttccgactcgtctgctcagagc
cagtctcaagaagcagcagcagcagcagccaatggagcgagctcagggcaagagaactcc
gacgctgatatggatacttcttcatctgattctccttctagttcagagggagaacaagaa
caagaacaagacagggaggaggactcggactatggaacttgcgattctgatgatgaccat
gatgatgaagaagatccgaggcaccaggagctccaggatattcagtatgggagatcatct
gaggatcagcagaaattgagctctctcgtctcgagattgagtgaagaagtcgatccttct
ctgcagttgattggtcttaccgagttatgtgaggtcttgtctttctgtactgaagactcg
ttttcgccgagggtgatggcggatacgctctcccgggtgcttgttaagttggctaatcat
gagagcaatgcagatatcatgctcctcgctatcagagccattacttacttgtccgatgtt
tatccgccgtctgtagcgttccttgtgaagcatgagactctccctgctctctgccagaga
ctactgacgattgagtacttggacgttgctgagcagtgtttgcaagcacttgagaaaata
tccaaagataatccagtggcgtgcttgaatgctggagcaattaaggcagtgctttcttat
attgatttcttctcaacaagcttacagagagtcgcagtttctactgtggtgaatatatgt
agggagctttcctctgagtctccctcgcctattatggatgctgttccaattttgtgcaat
cttcttcaatatgaagatcgacagttggtcgagagtgtggctatttgcttgacaaaaata
gcagatcaagttagccagtcacctgaaatgttggatcaactatgtagccatcaactgatt
catcaatccatacatcttttaaacttgaatggccgcaccaccctatctcaacctgtttac
aatggtttgattcgattgctaagaaaactatcttctggttcaactttggccttcagaacg
ttatacgagcttaatattggctacagacttaaagaaattatatccacgtatgacatttct
cattcagtgtcttctacacatcccaacaatacatgttccaaccaggtgcatgaagttctt
aagttggtgattgagcttcttccatcttcactagtagaggataatcagctggcattggaa
aaggaaagttttcttgtcaatcagcccgatctcttgcaacaatttggagcagacatgctt
cctgttttgattcaggtgctaaaatctggagcgaacgcatatgtttcttatggttgccta
tcagcaattcacaagctgacttgcttgagtaagtcggctgattttatcgatttactgaag
actgcaaacattttaagtgttttggcgggcattttgtcaaggaaagatcatcatgtggtc
gttgtagcactacagattgctgaagtgcttctggagaaatatagagatgcttttttgaat
tcgtttataagggagggcgtttttttcgcaattgaagcactcttcaagactgataggggg
caacagaatccagtatctgctgacgtctcacaaaagcctgtttcgaaagagaatgtgaaa
tgctcattgtgccagatttttgaaagatcgagttcctcttcttcacaaacttgtaagatc
gagaaagattctgtctacattctcgcaacacgtatcaaggagagattctttggacctgag
gtattcgactctcagaaaggcttgacagatgttctccagaacctcaagcacgtgtcatca
gcacttaacgatctgatgaatgtacctgtggatgcacgtgccctgcatactgagaagttc
ttctcaatatggaatcagatcatcgaaaggctcaacggaaaggaatcagtgtccactttt
gaatttacagagagtggagttgtaaaggcactggcaaattatctgtctaatggactccac
caaaggaattttagcaaaggcgatccagaatgtgatagtttaccatttgttggtaacaga
tttgaagtgttcacaagattactttggtctgacggcgaggcaacttcatccgtattaata
aagaagctccaaaattccttatcttctttagaaaactaccccactgtcctaagccagttt
ttgaagcaaaggaactcgttcgcgactgttcccaatggacgtagcacaagttatccaatc
ctaagagttcgttttgtcagagcagagggggagacttgtttgcgtgattactcccaagac
ttggtcaccgttgacccactttgctacttggatgctgtcgatcaatacatgtggcctaaa
gtccatttaaaacctttagattccgtcgaagcaaaagatcaagctatggaatgccaatct
tctcagctgcagtcgacttcgatatcttgtcaaggtgaaggctcaagccatatggagatt
gacattcctaatgcatctcagggatctcaagaggaagaccaagagcagcttacagattca
ggggaagagaatacttccgaagagaataatacttcctcatctgaagaggaggatgcgtta
gctgaagaggatccgttacctagacttttgtttcgtctagaagggattgaactagaccgc
tctttgactgtataccaggcaattctcttgcacaaacttaaatcaggaagtgaaactacc
aacgattccaagctgagtggaacccacaccatcacttatgaaagggctccacaactggca
gagtctcatgaaaatcagattcttctcggatctattatgaacaatgacgagtatcactcg
tttttatcctacttgtttgctcatacgcttggtttgcgctacatgggaacaaatcctcct
gcgtatgacatattgtttctgcttaagagtctggaggccatgaacagatacctctttcac
ctgatttgtcatgaacggattaatgcttttggggaaggtaggctggagactttggatgat
ctcagggtggaggttcgtcctgtgccgtatactgaatttgttagtagcaagtttacagag
aagttagagcagcagctgcgtgattcctttgctttgtcaacgtgcggtctaccaccgtgg
tttaatgatctaatgggttcatgcccattcctgtttagttttgaagtcaaatccaaatac
ttccggcttgcagcattcggctcgcagaaagtccatcatcatccacaacacctcagcagt
tcaagtggtcatggtgaagggcgcccagcaactggtagtttgcctcgtaaaaagttctta
gcatgccgtcaaaacattctggagtctgctgcaaaaatgatggagttacacggcagccag
aaggtggtcattgaggttgagtacagtgaagaagtgggaactggtcttgggccaacgctg
gagttctacacacttgtcagtagagcgtttcaagatcccgaccttggcatgtggaggagt
gatcgtagttcctttgctggaaaaccaagggagggctccggatctttggtggctccttca
ggactctttccacgaccttggtcagatacatcaactgctttcccagatgtgctgcagaag
tttgttctcttagggacagtggtcgcaaaggctttacatgatggacgagtcttagacatt
cctttctccaaagccttctataaactggttctcggacaggagttgagttcatttgacatc
cacttcattgacccagaactttgtaaaacactggttgaattgcaagctctggcacgtagg
aaaaaggttttctcagaatcacaaagtgatgcccgagcagcagccaagtgtgatttgagt
ttccgtggaacaaagattgaggacctttgtcttgaatttaccctgcctggctacacggac
tatgttctcgctccccattctgctaatgatatggtaaatttggataacctcgaggaatat
atcaaggctattgtcaatgcaacagtatgtaacgggatccaaaaacaagtggaagcgttt
cggtctggattcgacaaaattttccctattgaacatcttgagatattcaatgaagaagaa
ctggaaactctcctgtgtggagaacgagatctctttaatatgaatgaagtcttggatcac
gtcaagtttgatcatggatatacttctagcagcccacctgttcaaaatttgttggagatt
ctgcaagagtttgacaaggagcaacagcgagcctttctgcaatttgtaacaggatgtcct
cgtctacctcctgggggcttggcgtctctcaatcccaaacttacaattgtccgcaagcat
ggtagcgattcttcagaaacagacctgccgagtgtgatgacatgcgcaaattatctcaag
cttccaccttactcttccaaagaaaacatgaaggagaagctaatttatgctataactgaa
ggtcaaggttccttccatctctcttag
DBGET
integrated database retrieval system
