Raphanus sativus (radish): 108847358
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Entry
108847358 CDS
T06014
Name
(RefSeq) SWI/SNF complex subunit SWI3A isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108847358
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsz03021
]
108847358
03036 Chromosome and associated proteins [BR:
rsz03036
]
108847358
Transcription machinery [BR:
rsz03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108847358
Chromosome and associated proteins [BR:
rsz03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
108847358
PBAF complex
108847358
GBAF(ncBAF) complex
108847358
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Myb_DNA-bind_7
TtuA_LIM_N
Motif
Other DBs
NCBI-GeneID:
108847358
NCBI-ProteinID:
XP_056862595
UniProt:
A0A9W3DFJ3
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Position
3:10659750..10662198
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AA seq
521 aa
AA seq
DB search
MEVSSNDGSSFKEADLDLYTIPSQSSWFVWEDIHEIERREFVEFFSETSITRTPKVYKEY
RDFIINKYREDTSRRLTFTSVRKHLVGDVNLLRKVFIFLENWGLINFFLKESDDYEEESE
VKFEQGTPSGIRVTATPVSMRPVTLPPHVEERAEPAFKFSPLTSYSDVFADFKKPLLVCG
RCGERPFYQHTKSNVTLCDKCFKNGDYGENNSADDFKLIGSSGTADWTEEETLLLLESVL
KHGDDWELIAQSVSTKTRLDCISKLIELPFGEFLMGSASGRLRSSIPTSEDGNLSSPSNV
VERMKADGQEQKETETREEKEEDRVVDEDEPPAKRKHVAMLSDGDCSLLKQVAAMACKVG
PSVTAAAAKAAIAALCDEASCPKDIFETTGDSAVYRADGDKDTSDMEEQQEDKEGTQEDL
PVGLRMRASVATALGAAAAHAKILADQEEREMEQLAASIIDQQLKKMKSKLKFLDHLELI
MDAEEQVMEGVKETILQERISVLQCAFGDGITKRWDNMYVK
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atggaagtgagtagtaatgacggaagcagcttcaaagaagcagaccttgatctctacact
attccttctcaatccagttggttcgtatgggaagacatacacgaaatcgaaagacgcgag
ttcgtcgagttcttcagcgagacctccatcactcgaacccctaaggtctacaaggagtac
agagacttcatcatcaacaagtacagagaagacacctctcgccgcctcaccttcaccagc
gtccgcaagcacctcgtcggcgacgtcaatctcctccgtaaagtgtttatctttctcgag
aactggggtctgatcaacttcttcctcaaggaaagtgatgattatgaggaggagagtgaa
gttaagttcgaacaggggactccttccgggatccgtgtaaccgccactcctgtttccatg
aggcctgttaccttacctccccacgttgaggaaagagctgagcctgccttcaagttctcg
ccgctcacttcttattcagatgtgttcgctgacttcaagaagccgttgttggtctgtggg
cgttgtggagaacgtcctttctatcaacataccaagagtaatgtcactttatgcgacaag
tgtttcaagaacggagactatggggagaacaactcagcagatgatttcaagctgattggg
agctctggtacagctgactggaccgaggaggagacccttctcttgctagagtctgttctc
aaacatggagatgattgggagctcattgcacagagtgtttctacgaagactaggcttgat
tgtatttccaagctcattgagctcccttttggagagtttctgatgggatctgcctctgga
agactcagatcctctatcccaacctccgaggatgggaacctttcgtctccttccaatgtt
gttgaacgtatgaaggctgacggtcaagaacagaaggagacagagacgagggaagaaaag
gaagaagatcgtgtcgtcgatgaagatgagcctccagcaaaaaggaaacatgttgcaatg
ctatcggatggtgattgttcacttttgaaacaggtcgcagcaatggcatgcaaagttggt
ccatctgtcacggccgctgctgcaaaagctgcaattgctgctctttgtgatgaagcctct
tgtccaaaagatattttcgaaacaactggtgattctgcagtttacagagctgatggagac
aaagatacatcagatatggaggaacagcaagaagacaaagaagggactcaggaggatcta
cccgtaggtttaaggatgagagcgtcagtggcaacagctcttggagctgcggcggctcac
gcaaaaatactggctgatcaagaagaaagagagatggaacagttagctgcgagtataata
gatcaacagctgaagaagatgaagagcaagttgaagtttctggaccacttggaattgata
atggacgcggaagaacaagtgatggagggtgtaaaggaaacaattctccaagagaggatt
agcgttttgcaatgcgcgtttggtgacggtattacgaaacgttgggataatatgtacgtg
aaatag
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