KEGG   Raphanus sativus (radish): 108847382
Entry
108847382         CDS       T06014                                 
Name
(RefSeq) protein transport protein SEC13 homolog B
  KO
K14004  protein transport protein SEC13
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03013  Nucleocytoplasmic transport
rsz04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    108847382
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    108847382
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rsz03019]
    108847382
   04131 Membrane trafficking [BR:rsz04131]
    108847382
Messenger RNA biogenesis [BR:rsz03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     108847382
Membrane trafficking [BR:rsz04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    108847382
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    108847382
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    108847382
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 WD40_Prp19 Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_RIG_2nd WDR55 ANAPC4_WD40 Beta-prop_TEP1_C Beta-prop_IFT122_1st WD40_MABP1-WDR62_2nd EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_WDR75_1st WD40_RFWD3 Beta-prop_SCAP Beta-prop_DCAF12
Other DBs
NCBI-GeneID: 108847382
NCBI-ProteinID: XP_018476110
UniProt: A0A6J0MUF3
LinkDB
Position
3:complement(20307270..20309404)
AA seq 301 aa
MPGQKIETGHEDMVHDVQMDYYGKRVATASSDCTIKITGVSNNGGSQHLATLTGHRGPVW
QVAWAHPKFGSYLASCSYDGQVILWKEGNQNQWTQAHVFTEHKSSVNSIAWAPHDLGLSL
ACGSSDGNISVFTGRADGGWDTTKIDQAHPVGVTSVSWAPATAPGALVSSGLLDPVYKLA
SGGCDNTVKVWKLSNGSWKMDCFPALKKHTDWVRDVAWAPNLGLPKSTIASGSQDGKVII
WTVGKEGEQWEGKVLKDFMTPVWRVSWSLTGNMLAVSDGNNNVTVWKEAVDGEWEQVTVL
E
NT seq 906 nt   +upstreamnt  +downstreamnt
atgccgggtcagaagattgaaacaggtcacgaggacatggtccatgatgtgcagatggat
tactacgggaagcgagttgcaactgcctcgtctgactgcaccatcaagataaccggcgtc
agcaacaacggtggatcccagcacctagctactttaaccggccaccgcggtcctgtctgg
caggtcgcgtgggcccacccgaagtttggatcgtacctcgcttcgtgctcctatgacggt
caggtcatactctggaaagaaggcaaccaaaaccaatggacccaagctcatgtcttcacg
gagcataagtcttcagtcaactccattgcttgggctcctcatgacctcgggctatccttg
gcttgtggatcatccgatggaaacatttcggtgttcacaggccgtgctgatggtggctgg
gacacgacgaagatagaccaagcgcatccggttggagtcacttctgtctcatgggcaccg
gctactgcgcccggtgctcttgtgagctctggcttgctcgatccggtttacaagctggct
tctggtgggtgtgataatactgtgaaagtgtggaagctctcaaacgggtcctggaagatg
gattgctttccggctcttaagaagcacacggattgggtccgtgatgtggcttgggcaccg
aacttgggtctccctaagtccaccatagccagtgggtcacaggatgggaaagtgataata
tggactgtggggaaagaaggtgagcagtgggaagggaaggttctgaaggactttatgact
ccggtgtggcgggtgtcgtggtcgttgactggtaacatgttggctgtgtccgatgggaac
aacaacgtgacggtgtggaaagaggctgttgatggagagtgggaacaagtcaccgttctg
gaatga

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