KEGG   Raphanus sativus (radish): 108847515
Entry
108847515         CDS       T06014                                 
Name
(RefSeq) flowering time control protein FY isoform X1
  KO
K15542  polyadenylation factor subunit 2
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    108847515
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rsz03019]
    108847515
Messenger RNA biogenesis [BR:rsz03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     108847515
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_CDC20-Fz WD40_Prp19 Beta-prop_WDR3_2nd WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_Gbeta WDR55 Beta-prop_TEP1_2nd EIF3I Beta-prop_EML Beta-prop_IFT140_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_EIPR1 Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd Beta-prop_WDR19_1st Beta-prop_TEP1_C Beta-prop_Aladin Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_WDR41 Beta-prop_WDR75_1st Beta-prop_DCAF4 WD40_RFWD3 eIF2A Beta-prop_WDR35_TULP_N Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_Vps41 Beta-prop_DCAF12 Beta-prop_SPT8 WD40_like WD_LRWD1 Beta-prop_NUP159_NUP214 Beta-prop_RIG_1st PROPPIN WDR54 Beta-prop_IFT122_2nd
Other DBs
NCBI-GeneID: 108847515
NCBI-ProteinID: XP_018476271
UniProt: A0A6J0MX99
LinkDB
Position
3:25858277..25862951
AA seq 657 aa
MYGDSMQQQLPPMQNQHLGGPPMHHPPPMMRHPSASSTNINPDYHHPGSAPNPFDSHVDG
FGGKRMRKHTQRKAVDYTSTVVRYIQARTWQRDSRDMTSLQPTPAAAVDMLPPVAYSDNP
STSFAAKFVHSSLNKNRCSINCVLWTPSGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQ
PIRSMVWSHNDIWMVSGDDGGTLKYWQSNMNNVKANRTAHKESIRDLSFCKTDLKFCSCS
DDTTVKVWDFTKCQEEITLTGHGWDVKCVDWHPTKSLLVSGGKDQLVKIWDARTARELCS
LHGHKNMVLSVKWNQNGNLLLTASKDQLIKLYDIRTMKELESFRGHKKDVTSLAWHPSHE
EYFVSGSVDGSICHWIVGHENPQIEIPNAHDNSVWDLAWHPIGYLLCSGSNDHTTKFWCR
NRPGDNPRDALTMQNQGYNEQGFGNRMPDNFQPSEASPTPGAFVPGLTRNEGTIPGIGIA
MPFDASSQGEHKQPLMAPPLPPGPHPSLIGSGQQQGYQQQQHHQGHPQQIPPMPNMPHLQ
RPPSSHMPLHPHPHHPRPMQMPPHGHMPPSSMPMSHQMPGPMGTHGGMNPQMSQGHYMGP
PSGAFQGPPSSGGPQMYPQGRGFNRPQMMPGYNNPFQQQPQPPLPGGPPPNTNQQHQ
NT seq 1974 nt   +upstreamnt  +downstreamnt
atgtacggagattcgatgcagcagcagctcccaccgatgcagaatcaacacctcggaggt
ccaccgatgcatcatcccccaccgatgatgcggcatccctcggcctcctccaccaatatc
aatcccgattaccaccatcccggctctgccccaaatcccttcgactcacatgttgacggt
tttggggggaaacgaatgagaaagcacacacagagaaaggctgttgattacacgagtact
gttgtgagatacattcaggctcgtacgtggcagcgagactcaagggatatgacctctttg
caaccaaccccagctgctgcagttgatatgcttcctccagttgcctattcagataatcct
tctacgagctttgctgcgaagtttgttcactcatcgcttaacaagaaccgttgttcaatc
aactgtgtattgtggacaccttcaggaagacgtcttatcactggctcccaaagtggggag
tttactctttggaatgggcaatctttcaatttcgagatgattcttcaggcacatgatcaa
cctataaggtcgatggtatggagccacaatgacatttggatggtttctggtgatgatgga
ggcacactaaagtactggcagagcaatatgaataatgtgaaagccaatagaactgctcac
aaggaatctattcgtgatctaagtttctgtaaaacagatttgaagttctgttcgtgttct
gatgatacaactgttaaagtttgggattttaccaagtgccaagaagaaattacattaacc
ggccatggttgggatgtcaagtgcgtcgactggcaccccacaaagtccctactagtttct
ggtggaaaagatcaacttgtcaaaatctgggatgccagaactgcaagagagctttgctca
cttcatggtcacaaaaacatggtgcttagtgtgaagtggaaccagaatggcaatttgctt
ttaacagcctcgaaagatcaactaattaagctgtatgatataaggactatgaaggagctt
gaatcctttcgtgggcacaagaaagatgtaacatctttggcgtggcatccatcccatgaa
gaatactttgtcagtgggagcgttgatggatccatttgtcattggattgtggggcatgaa
aacccgcagattgaaatccctaatgctcatgataacagtgtttgggatcttgcgtggcat
cctattggatatcttctttgcagtgggagcaacgatcacacaaccaagttttggtgcaga
aacaggcctggagataatcctcgagatgcgcttactatgcagaaccaaggctataatgaa
caaggttttggcaatcgcatgcctgataatttccaaccatctgaggcatcgccaactcct
ggagcatttgttcctgggctgacacggaatgaggggaccatcccgggaatcgggatagca
atgccatttgatgcatcctctcaaggggaacataaacagcctctcatggctcctccgctg
ccacctggtccccacccatcgcttattggaagtggccagcagcaagggtatcagcaacaa
caacaccaccaaggtcatccccagcaaatccctccaatgcccaatatgcctcatcttcag
cgaccaccatcgtctcatatgccattgcatcctcatcctcatcatccccggcctatgcag
atgcctcctcacggtcacatgccaccttcctcaatgcctatgtctcatcagatgcccgga
ccaatgggaacgcatggcggcatgaatccgcagatgtcgcaaggccattatatgggtcct
ccttctggagcatttcaaggaccaccaagcagtggtggaccccaaatgtatccccaagga
cgtggtttcaaccgtccacagatgatgccagggtacaacaaccctttccaacagcagcct
caaccgcctttacctggaggccctccaccaaacaccaatcaacaacatcagtag

DBGET integrated database retrieval system