Raphanus sativus (radish): 108847571
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Entry
108847571 CDS
T06014
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03013
Nucleocytoplasmic transport
rsz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108847571
03015 mRNA surveillance pathway
108847571
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108847571
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
108847571
mRNA cycle factors
P-body specific factors
108847571
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Glycos_transf_N
FapA
Motif
Other DBs
NCBI-GeneID:
108847571
NCBI-ProteinID:
XP_018476348
UniProt:
A0A6J0MX20
A0A6J0MXH4
LinkDB
All DBs
Position
3:15631210..15638623
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AA seq
1157 aa
AA seq
DB search
MDHHHQEEENHTEKQDDEEALARLAEIKKAIEAKMALRQNNLNPERPDSAYLRTLDSSIK
RNTAVIKKLKQINEEQREGLMDDLRSVNLSKFVSEAVTAICEAKLKSSDIQAAVQICSLL
HQRYKEFSPSLTQGLLKVFLPGKSADDLDADRNSKAMKKRSTLKLLLELYYVGVIEDSNI
FINIIKDLTSAEHMKDRDTTQTNLTLLAGFARQGRVFLGLPISGQDEDFFKGLGVTAEQK
KNFKKAFNTYYDALAELLQSEHKSLQQMEKENSKLVNAKGELSEDSASSYEKLRKSYDHL
YRNISSLAEALDMQPPVMPEDGTTRLTVGDEASSSGAVKDTSVPEPVWDDEETKTFYECL
PDLRAFVPAVLLGEVESAKTKDKSSESSSEVVEGQQTAEDTTEFPADSGSMADVSTIEQP
KEKDEVDKEKAKDAKKEKGKEKDSDKKLENEKEKGKSLDVANFERLLQRLPGCVSRDLID
QLTVEYCYLNSKTNRKKLVKALFNVPRTSLELLAYYSRMVATLATCMKDIPSTLVQMLED
EFNYLVHKKDQMNIESKIRNIRFIGELCKFKIVPSGLVFSCLKACLDDFTHHNIDVACNL
LETCGRFLYRSPETTLRMTNMLDILMRLKNVKNLDPRQSTLVENAYYLCKPPERSARISK
VRPPLHQYIRKLLFSDLDKDSITNVLKQLRKLPWSECEQYILKCFMKVHKGKYGQIHLIA
SLTSGLSRHHEEFAVAVVDEVLEEIRVGLELNEYGAQQKRLTHLRFLGELYNYEHVDSSV
IFETLYLTLSYGHGTSEQEVLDPPEDFFRVRMVIILLETCGHYFDRGSSKKRLDQFLIHF
QRYILSKGHPPLDIEFDLQDLFANLRPNMTRYTTIDEVNAAILQLEERQHASGADKGSVE
RHPDTKRPGMFSNGEAPKEESDSDSGSGSAVRDGQNEELEDGNHERGSESEDGDDYDDAV
GPGSDDDNEFRVRQKVVTVDPEEQADFDQELKALLQESIEQRKLELRGRPALNMTIPMSV
FEGSGKDHHHFGRVTGDNGEEVVDEENGEPREVQVKVLVKRGNKQQTKQMLIPSDCSLVQ
STKQKEAADLEEKQDIKRLVLEYNERDEEEANGLGTQASNWTPAGSRGNTRGYTGGVARH
RFVYHQGGGGSYHSRRK
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atggatcatcatcaccaagaggaggaaaaccacaccgagaaacaagacgacgaggaagct
cttgctcgccttgcggagattaagaaggcaattgaagctaagatggctcttcgtcaaaac
aatctcaatcctgaacggcctgattcagcgtatcttaggactcttgattctagtatcaag
cgcaatacagcagttatcaagaagttgaagcagatcaatgaggagcagcgtgaagggctc
atggatgatctgcgaagtgtgaaccttagcaaattcgttagcgaagcagttactgccatt
tgtgaggccaagctcaaaagttctgatatacaagcagctgttcagatatgctcactactt
catcagaggtataaagagttttctcctagtctgacacaagggctcttgaaagtcttcctt
cctggaaaatctgccgacgacttagatgcagacaggaactcaaaggccatgaaaaagcgc
agtaccctaaaacttctcctggagctctattatgttggagtaatagaagatagtaacatc
ttcatcaatattattaaggaccttaccagtgctgagcacatgaaagatcgagatacgacc
cagacaaatttgacacttcttgccggttttgctaggcaaggaagagtttttcttgggctt
cctatatctggacaagacgaagattttttcaagggcctcggcgtcactgcagaacagaaa
aagaatttcaagaaagctttcaacacatattatgatgctctggcagagttacttcaatct
gagcacaagtcgcttcaacaaatggaaaaagaaaattcaaaactggtaaatgctaaaggg
gagcttagtgaagacagtgcatcgtcatatgaaaagctgaggaaatcatatgaccatctc
tatcgaaacatctcctctttggctgaagcacttgacatgcagcctcccgttatgccagag
gatggtacaactaggctcacagtaggggacgaggcctcatcgtctggtgctgtaaaagat
acatctgtccccgaacctgtttgggacgatgaagagaccaagacattttatgagtgcttg
cctgatctgagggcatttgttccagcagtcttgttgggggaagtagagtctgcaaagaca
aaagacaaatcatctgagtctagctctgaagttgtcgaaggtcaacaaacagctgaagac
acaacagagtttcctgctgattctggtagtatggctgatgtctcaactattgagcagcca
aaagagaaggatgaagtagataaggaaaaggctaaggatgctaagaaggaaaaagggaaa
gaaaaggatagtgacaagaaattggaaaatgagaaggagaaaggcaagagccttgacgtg
gcaaacttcgaaagattgttacagcgacttcctggttgcgtaagccgtgatcttattgac
cagttgacggtggagtattgttatttgaattccaagacaaacagaaaaaaacttgtcaaa
gcgttatttaatgtccctaggacatctctggagttgctagcatactattcgcgtatggtt
gcaacactagcaacgtgcatgaaagacatcccttctacgcttgtgcagatgttggaggac
gagttcaattatctagtccataaaaaggaccaaatgaatatcgaatcaaaaatccggaac
atcagatttattggagaactctgcaagtttaaaattgtaccttctggacttgtattcagt
tgtttgaaggcttgcttagatgattttactcatcataacattgatgttgcttgcaatctt
ctggagacatgtggccgtttcctttatcggtctcccgagaccacactcaggatgactaat
atgctggacatattgatgcgcctgaaaaatgtcaagaacttagatcctcgtcaaagcact
cttgtggaaaatgcctactacctttgtaaaccacctgaaagatcagcacgaatttctaaa
gttcgaccaccattgcatcagtatattcgaaaattgctgttttcggatcttgataaagat
tccattacgaacgtactgaagcaactgcggaagctaccgtggagtgaatgtgagcaatac
atcttgaagtgctttatgaaggttcacaagggaaagtatggtcagattcatttgattgca
tccctgacttctggattgagccgccatcatgaggagtttgcggtggctgttgttgatgag
gtactggaggagataagggttggacttgagttgaatgaatatggggcacaacagaagcgt
ctaacccatttgagattcttaggggaactgtacaactacgagcacgtagattcgtctgtg
atattcgagacactttacttaactctttcgtatggtcatggtacttcagagcaagaggtg
ctggatccgccagaagattttttccgtgtcaggatggttatcattctcttggaaacatgt
gggcactactttgatcgaggttcttcaaagaaaaggcttgatcaatttttgatacatttc
cagagatacatactgagcaagggtcatcctcctctggatattgaatttgacttgcaggat
ctatttgccaatttgagacccaatatgacccgttacacgactattgatgaggtcaatgca
gctatacttcagctggaagagcgtcaacatgcttctggtgcagacaaaggcagtgtagaa
agacatccagatacaaagcgtccaggcatgttttctaacggtgaagctcccaaagaagaa
agcgacagtgattctggtagtggctctgctgtacgagatggacagaacgaagagttggag
gatggaaatcatgagcggggatctgagagtgaagatggtgatgactatgatgatgccgtt
ggacctggatctgatgatgataatgaatttagggtaaggcagaaggtagtaaccgtagat
cctgaggaacaagcagactttgatcaagaactgaaggctttacttcaggagagcatagag
caaaggaagctagaattacgtggtagaccggcactgaacatgacaataccgatgagtgtt
ttcgaaggatccggaaaagatcaccatcattttgggcgagtcacaggtgacaacggcgag
gaagtggtggacgaagagaatggagagccaagagaagttcaagtgaaggtcctagtgaaa
agaggaaacaaacaacaaacgaaacaaatgctaatcccgagtgattgctcgctagtgcag
agcacaaaacagaaagaagctgcggatttggaagagaagcaagacataaagaggttagtg
ctcgagtacaatgagagagacgaagaggaagctaatgggttagggacacaagcatcgaat
tggacacctgcaggaagcagaggaaacactcgtggttacacaggtggtgtagctcgtcac
cggtttgtttatcatcaaggaggtggtggttcgtatcattcccgaagaaagtaa
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integrated database retrieval system
