Raphanus sativus (radish): 108847606
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Entry
108847606 CDS
T06014
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108847606
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108847606
03012 Translation factors [BR:
rsz03012
]
108847606
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108847606
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
108847606
Translation factors [BR:
rsz03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
108847606
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
BEX
NACHT
T2SSE
Rad17
Cas3-like_C_2
ATPase
Motif
Other DBs
NCBI-GeneID:
108847606
NCBI-ProteinID:
XP_018476388
UniProt:
A0A6J0MX57
LinkDB
All DBs
Position
3:complement(17404330..17408938)
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AA seq
1004 aa
AA seq
DB search
MPPHGPNSQGGRRGGGFSSGRGGGRRGGRGGGGGGGRGGGGGRGEQRWWDPVWRAERLRQ
QQVEMEVFDENEWWNKIEQMKAGGEQEMVIKRNFSRGDQQTLGDMAYQMGLYFHAYNKGK
ALVVSKVPLPDYRADLDDRHGSTQKEIQMSSETERKLGSLLKTTQQVGSSNASTSASHDQ
RDSTSAPGLKKSDSASKFSDSHEKEKFSVALKDRQDKLKATESVKSLQAFREKLPAFKMK
QGFLNSVSENQVLVVSGETGCGKTTQLPQFILEEEISSLRGADCNIICTQPRRISAISVA
SRISAERGEPIGESVGYQIRLESKRSDQTRLLFCTTGVLLRRLIEDPNLSGISHLLVDEI
HERGMNEDFLLIILRDLLPRRPDLRLILMSATINADMFSTYFGNAPTMHIPGFTFPVTEL
FLEDVLEKSRYAIKSSDSGNYQGSSRGRRRDSESKKDDLTTLFEDIDINAHFKSYSSATR
LSLEAWSGAQIDLELVEATIEHICRREGDGAILVFLTGWDEISKLLESIKGNRLLGDSSK
FLVLPLHGSMPTVNQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYD
ALNKVACLLPSWISKASAHQRRGRAGRVQAGVCYRLYPKVIYDAFPQYQLPEIIRTPLQE
LCLHIKSLQVGSIGSFLAKALQPPDSLAVENAIELLKTIGALDDTEDLTPLGRHLCTLPV
DPNIGKMLLIGAIFQCVNPALTIASALAYRSPFVLPLNRKEEADEAKRYFAGDSCSDHIA
LVKAFEGYRDAKRGGNERDFCWENFLSPVTLKMMEDMRNQFLDLLSDIGFVDKSRGPNAY
NQYSQDMEMISAVLCAGLYPNVVQCKRRGKRTAFYTKELGKVDIHPGSVNARVNLFSLPY
LVYSEKVKTTSVYIRDSTNISDYALLMFGGNLIPSQTGEGIEMLGGYLHFSASKNVLELI
QRLRGEVDKLLNRKLEDPSLDITVEGKGVVSAVVELLRSRNMRY
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
atgccacctcacggtcctaactctcagggtggtcgccgaggcggaggtttctcatccggt
cgcggtggaggtcgccgcggtgggcgcggaggcggcggcggcggtggacgcggcggagga
ggcggccgtggagaacagagatggtgggatccggtgtggagagccgagcgtttgcgccag
caacaggttgagatggaagtttttgatgagaatgaatggtggaacaagattgagcagatg
aaagcaggaggagaacaagagatggtgataaaacgtaactttagccggggtgatcagcaa
acactcggtgatatggcttatcagatgggtctttactttcatgcgtacaataaagggaag
gctcttgtggttagcaaagttcccttgccagattacagagcagatcttgatgaccgacat
ggatccactcagaaagagattcaaatgtcttcggagacagagagaaaacttggaagtctt
ttgaaaacaacacaacaagtaggctcttcaaacgcctctacttcagcatctcatgaccaa
cgggatagtacatcagctcctggcttgaaaaaatctgattctgcttccaaattttcggat
tctcatgagaaagaaaagttcagtgttgccctcaaggacaggcaggataaactaaaggca
actgaaagtgtaaaatcacttcaagctttcagagaaaagctacctgctttcaaaatgaaa
caaggcttccttaactctgtttcagaaaatcaggtattggtagtttcaggagagacaggg
tgtggtaaaacaacacaacttcctcagtttatattggaagaagagatatcatctctgaga
ggtgctgattgcaacataatctgcacacaacctcggcgtatatctgccatatccgtggca
tctcgtatatctgctgaaagaggtgaacccattggtgaatctgtgggttatcagatccgt
ctcgaatcaaagcgttctgaccaaacacggttgctgttttgcacaactggtgttttactg
agacggctgattgaggatcctaatctaagtggcataagccatttgcttgtggatgaaatt
cacgagagaggcatgaatgaggatttcttactaatcatactaagggatcttcttcctcga
cgtccagatttgcgtcttattctgatgagtgctaccattaacgctgacatgttctcaacg
tattttggcaacgctccaactatgcatatcccggggttcacattccctgtgacagagtta
ttcctagaagatgtattagagaaaagtcgctatgctattaagtcatctgactcagggaat
tatcaaggtagctcaagaggtagaagaagagactcagaatccaagaaagacgacctgact
acactctttgaggatattgacatcaatgctcacttcaaaagttatagctcagccacaaga
ctttctctcgaagcatggtctggcgcacagattgatttggagctggttgaggcaacaata
gaacatatttgccgtcgtgaaggtgatggagccattcttgttttcctcaccggctgggat
gagatttcgaagctgcttgaaagtatcaaagggaacaggttacttggagactctagcaag
ttcttagttcttcctctacatgggtcaatgcctactgttaaccaacgtgaaatctttgac
cgtccacctcctaacaagcggaagatagttttggctacaaacattgctgagagtagtatc
acaatcgatgatgttgtgtacgttgtggattgcggtaaagcaaaggaaactagctatgat
gctttgaacaaggtggcatgtctcttaccatcatggatctcaaaggcttcagctcatcag
agacgaggtcgtgcaggacgtgtccaagctggagtttgttataggttgtacccaaaagtt
atttatgatgctttccctcagtatcagttaccagagatcatacggactccattgcaagag
ctgtgcctacatatcaaaagtttgcaggttggatcaataggatctttcttggcaaaggca
cttcagccaccagattctcttgctgttgagaatgctattgagcttctcaaaactattggg
gctttagatgatacagaagatcttacaccccttggtcgtcatctttgcacactacctgtt
gatccaaacataggaaagatgcttctcattggagctatcttccagtgtgtcaatcctgct
ctgacaatagcgtctgctctggcttaccgtagcccttttgtcttaccgttaaacaggaaa
gaggaagctgatgaagccaaaagatactttgctggtgattcctgcagtgatcacattgct
cttgttaaggcctttgaagggtaccgagatgcaaagcgtggtggaaacgaaagagatttt
tgttgggagaactttctctcccctgtaaccctaaagatgatggaggatatgaggaaccag
tttcttgatcttctttcagatatagggtttgtagacaaatcaagaggaccaaacgcatac
aatcagtacagccaagatatggagatgataagcgcggttctgtgtgcggggctgtaccca
aacgttgtgcagtgcaaaagaagagggaagcgcactgccttctacactaaagagctgggt
aaagttgatatccaccctggatcagtcaatgccagggtgaatctcttctcgttgccatac
ttggtttacagcgagaaggtgaagacgacgagtgtttacatcagggactcgacgaacata
tcagattacgcattgcttatgtttggtggcaatcttatcccaagccagacgggggaaggt
atagagatgttgggagggtatctccatttctcagcctccaagaacgtcttggaactgata
cagaggttgaggggggaggttgacaagctgctgaataggaagttagaggatccgagtttg
gacataactgtggaggggaaaggagtggtttcggctgtggtggagttgttgcgtagcaga
aacatgaggtattaa
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