Raphanus sativus (radish): 108847788
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Entry
108847788 CDS
T06014
Name
(RefSeq) paired amphipathic helix protein Sin3-like 2
KO
K11644
paired amphipathic helix protein Sin3a
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rsz03036
]
108847788
Chromosome and associated proteins [BR:
rsz03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
108847788
REST complex
108847788
Heterochromatin formation proteins
Other heterochromatin formation proteins
108847788
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAH
Sin3a_C
Sin3_corepress
PAH_ZNF598
Motif
Other DBs
NCBI-GeneID:
108847788
NCBI-ProteinID:
XP_018476625
UniProt:
A0A6J0MVZ8
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All DBs
Position
3:25565843..25572861
Genome browser
AA seq
1344 aa
AA seq
DB search
MKRIRDDVYSSGSQFKRPFPSSRGESYVQSPVPGDGGGVNSQKLTTDDALSYLKDVKEMF
QDQRDKYDMFLEVMKDFKAQRTDTSGVIARVKELFKGHNNLIFGFNTFLPKGFEITLDEV
EEEEEEAPPPKKTVEFEEAISFVNKIKKRFQNDEDVYKSFLEILNMYRKDDKDITEVYNE
VSALFEDHLDLLEEFTRFLPESLAAHSAAQLIRSQAQRYHDRGSGPPLVRRMLMEKDRRR
ERAVASRGDRDQSVDRSDLNDDKAMVKMHREPKKRVDKENRERRSRDLDDGEAEQDNLHH
FSEKRKSSRRTSEGFEAYSSPASHSEKNNLKSMYNQAFVFCEKVKERLSSQDDYQTFLKC
LNIFSNGIIDRNELQNLVSDLLGKFPDLMDEFNQFFERCENGFQHLAGVMSKKSLISEEH
LSRPVKKEEKEREYKRDLDAAKEKERSKDNKYLEKSIQELDLSDCERCTPSYRLLPSDYP
IPSVRHRQKLGAAVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESV
GSAAKNAEDLLNNIIEKKISIEGSFRVEDHFTALNIRCIERLYGDHGLDVTDLIRKNPAA
ALPVILTRLKQKQEEWTKCREDFNAVWADVYAKNHYKSLDHRSFYFKQQDSKNLSAKALV
TEIKDLKEKSQEEDDVLLSVAAGHRQPIVPHFEYEYLDRTIHEDLFKLVQFSCEEICSTK
EQIDKVLKLWRNFLEMMLGVPPRAKGSNSVEDDVVETKHHGALTSGEVNVSSGSANLTSR
QLKFTAYGDENTAAKENCKDGDHPAKKDVATCSAVKPQKDQENGNGADKRSGDVGDRVAS
GVENNNSKVGSGDSSGARGILSKPGEAIDNTDTIHHTQVRCIGSRTIVTSDGVLPDASKA
NSNYDGSSNIEKEEGELSPIGDSEDNFVVYEDSGLKSTAKPEHSVEAEGDNDEDEDGDDA
SEGGEDASGTESIGDECSQDGNGMEEEGDHDEIDGKAESEGEAEGMDSHLIEEEEEDNRL
LPLSERVVLSVKPLSKHVAAAALLDERQKDSRVFYGNDDFYVLFRLHRILYERILSPKTY
CTGGEVNRRNTKDTTSSPDPYARFMSALFSLLNGSAESSKFEDECRAIIGNQSYVLFTLE
KLIYKLVKQLQAVVADDMDNKLLQLYEYEKSRKPGRVIDSVYYENARILLHEENIYRLEC
SSSPPHLSIQLMDNIIEKPEACAVSMDPTFANYLQKEFLSNSSGKKVVPQSIVLKRNMRG
YSGLDDLAVACKAMENVEVINGLECKMSCSSYKISYVLDTEDFFHRKIKKKKKKSENSSH
DNSSSQQRKLYRIERFHKFLSASR
NT seq
4035 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggattagagatgatgtgtactcctctgggtctcaattcaaacgtcctttcccc
tcttctcgtggcgaatcatatgtgcaatctccagtgcctggtgatggtgggggagtaaac
tctcagaagttgacaaccgatgatgctttgtcctacttgaaggatgtcaaggagatgttt
caagatcaaagggacaaatatgatatgtttcttgaggttatgaaagacttcaaggcacaa
aggaccgatacgtctggtgtgattgcacgagtcaaggagttgtttaaagggcataacaat
ttgattttcgggtttaacacctttctgcctaagggatttgaaataacgcttgatgaagtt
gaagaagaagaagaagaagctccaccacctaagaagactgttgaatttgaagaagccatc
tcttttgttaataaaatcaagaaacggttccagaacgatgaagatgtgtataagtctttc
ttggagatcttaaatatgtatcggaaggatgataaggacatcactgaggtttacaatgag
gtatcggctctttttgaggaccacctggatttgcttgaagagtttactaggtttctgcca
gagtctttggcggctcattcagcagctcagttaatacggagtcaggcccaacggtatcat
gaccgaggatcaggccctcctcttgtgcgtcgaatgttaatggagaaggatcgccggcga
gaaagggctgttgcttctcggggtgaccgtgatcaaagtgttgaccgttctgaccttaat
gatgataaagcaatggttaagatgcacagagagccgaagaaacgagtcgataaggagaat
agagaaaggagaagccgtgatttggatgatggagaagcagagcaagataacttgcaccat
ttctcagagaaaaggaagtcatccagaagaaccagtgagggctttgaagcgtactccagt
cctgcctcacattctgagaaaaacaatctaaaaagcatgtacaaccaagcatttgtgttt
tgtgagaaagtcaaggagagattaagcagccaagatgattatcagacattcttgaagtgt
ctcaatattttcagcaatggaattatcgacaggaacgaactgcagaatttggtctctgat
ctgcttggaaaattccctgatctcatggatgagttcaatcagttctttgagcgttgtgag
aatggtttccagcacctcgctggcgttatgagcaaaaaatcacttattagtgaagaacat
ttatctaggccagtgaagaaggaggaaaaggaaagagaatacaaacgagaccttgatgct
gctaaggaaaaggagcgttccaaggacaacaagtacttggagaaatctattcaagagctt
gatctatctgattgcgagcgttgcactcctagctaccgactcctcccatcggattatcca
ataccttcggtgcgccacagacagaaactaggggctgctgttttaaatgatcactgggtt
tctgtcacctcaggaagtgaagactactcttttaagcacatgcgcagaaaccaatatgaa
gaaagtttgtttagatgtgaagatgacagatttgagttggatatgctgttggaatctgtg
ggttctgctgcgaaaaacgcagaagacttgttgaataatataattgagaagaagataagt
attgagggctccttccgggttgaagaccacttcacagccctaaatataaggtgcatagag
agactttatggtgaccatggtcttgacgtaacagacctaatacgtaagaatcctgccgct
gcacttcctgtaattcttactcgtttgaagcagaaacaagaagagtggacaaagtgccgt
gaagattttaatgcggtctgggcggatgtgtatgccaaaaatcattacaagtcacttgat
caccgcagcttctattttaagcagcaagattctaagaacttgagtgcaaaagcgctggtg
actgaaatcaaggacctgaaagagaagtctcaggaagaagatgatgttcttctgtctgta
gccgctggtcacagacaacccatagttcctcacttcgagtatgaatatttggacaggact
attcatgaagatctatttaaactagtccaattttcgtgtgaggagatatgttctacaaag
gagcagatcgataaagttctgaagctctggagaaatttcctggagatgatgcttggtgtt
ccacccagggccaaggggtcaaattctgttgaagatgatgttgtagaaaccaagcatcac
ggtgcattgacgagtggggaggtgaatgtgagctctggctcggcaaatttgacttcgagg
caactaaagttcactgcctatggagatgagaatactgcagcgaaagaaaactgtaaggat
ggtgatcatccggctaagaaagatgttgccacctgttctgctgtaaaaccccagaaagat
caagaaaatggaaatggagctgataaacgatctggagatgttggtgatagagtagccagt
ggggtagaaaacaataatagtaaagtagggagtggagattcgtcaggtgcacgtggcatt
ttatccaaaccaggtgaagctatagataacactgataccattcatcatactcaggtacgt
tgtattggcagtagaactatagttacatcagatggagtgctgccagatgcttctaaagcc
aacagtaattatgatggttcatccaatattgagaaggaggaaggtgaattatcacctatt
ggtgattctgaagacaactttgttgtttatgaagatagtggtttgaagtctactgccaag
ccagaacattccgttgaagctgaaggagataatgatgaagatgaggatggtgatgatgct
tcagaaggtggggaggacgcgtccggaactgaatctattggtgacgaatgttcacaagac
ggtaatggtatggaggaagaaggtgatcatgatgagattgatggtaaagctgagagtgaa
ggagaggcagagggaatggattctcatcttatagaagaagaagaagaagacaatcggttg
cttccattgtcagaacgtgttgtgttatccgttaagcctctttcaaagcatgtagctgca
gctgcgttgcttgatgagagacaaaaagattccagagtgttctacggcaatgacgacttt
tatgttcttttcaggcttcatcgaatcctgtacgagagaattttgtctccaaaaacatat
tgcacaggcggtgaagtgaatcgaagaaacacgaaagatactactagttcaccagatcct
tatgcaaggtttatgagtgctctgtttagtctgcttaatggctcagctgaaagctccaag
tttgaggatgaatgtcgagctattattggaaaccaatcgtatgttctattcacgttggaa
aaactgatatacaaactagttaaacagcttcaagctgttgtagcagacgatatggataat
aagcttcttcagttgtatgagtatgagaagtctaggaaacctgggagggtcattgactcg
gtgtattatgaaaacgccaggatcctccttcacgaggaaaatatctatcggttggaatgt
tcgtcctctccacctcatttgtcaatccagcttatggataatataatcgaaaagcctgag
gcttgtgcagtttccatggatcccacgtttgcaaattatctgcaaaaagagtttctttcc
aactcatcagggaaaaaagtagtgccgcagtccattgtgttaaaaaggaacatgcgtgga
tactctggtctagatgatcttgcagtagcctgcaaggcaatggaaaatgtagaagtaatt
aatggcctcgagtgcaagatgtcttgctcttcctacaagatttcgtatgttttggacacg
gaggatttcttccacaggaagataaagaagaagaagaagaagagcgagaactcgtcacat
gacaactcatcatcccagcaacgcaagttgtatagaatagaaagattccacaagtttctc
tcagcttcaagatga
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