Raphanus sativus (radish): 108847801
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Entry
108847801 CDS
T06014
Name
(RefSeq) probable NOT transcription complex subunit VIP2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108847801
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108847801
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108847801
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108847801
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
108847801
NCBI-ProteinID:
XP_018476647
UniProt:
A0A6J0MW24
LinkDB
All DBs
Position
Unknown
AA seq
612 aa
AA seq
DB search
MSNLHSSLNASASNLPDGSGRSFPGSYSGQSGAPSPAFHHSGGNLQGLHTLHGSYNLQGT
LSSRNSSMNSIPSPGVQQQPNGSFSSGRFASSNLPVPLSQLSHNSSHGHSGIPNRGGINV
GNPGFSSNVNGGAGSVPGILSTSPGLGNRSSVQMGMSQLLGNAGPRITTNSMGNMVGGGN
LRNISSGGLSLPGLSASRLMAGNSGSGLGVQGQNRMMGGLPQGSQVMSMLGNSYHTGGGQ
LSQNHLQSVNNMMLGDHSNDSSLFDINNDFPQLTSRPGSAGGTQGQLGSLRKQGLGVPLA
QQNQEFRIQNEDFPALPGYKGGSSDYPMDMHQKEQLHDNAMSMMHSQNFPMGRSGGFNLG
ETYSSHRPQQQPQHTSSTGGLQGLGLRPLNSPNPVSSNGYDQLIQQYQQQRQNQSQFPVQ
QMSSMNQFRDSELKSAQAEADPFCLLGLLEVLNGSNPELTSLALGIDLTTLGLDLNSTGK
LYKTFASPWTNEPAKTEVEFTVPSCYYATPPPPLTRASFKRFSYELLFYTFYSMPKDEAQ
LYAADELYERGWFYHKELRLWFFRVGEPLVRTAAYERGTYECLDPNSFKTVRKEHFVVQY
EHMEKRPSLLQH
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaccttcattcatctctcaatgcttcagcttccaatttgccagatgggtccggc
agatcttttcctggttcctattccggacagtctggtgcaccttctcctgcttttcatcat
tctggtgggaatcttcagggacttcatacccttcatgggagttataaccttcaaggtaca
ctttcgtcaagaaactcaagtatgaatagtatcccatctcccggtgtacaacaacaacct
aatgggagtttttccagtggaagatttgcttccagtaacctccctgttcctctctctcag
ttgtctcataatagctcacatgggcactcgggaatcccaaatagaggagggattaatgtt
ggcaaccctggttttagtagtaacgtcaatggaggtgctggttctgttcctgggatcctc
tccacttctccaggacttggtaaccggagtagtgttcagatgggaatgtcccagctattg
ggaaacgctggtcctcggataacaacaaattcgatggggaacatggttggtggaggtaac
ttgaggaatatcagctccggtgggttgtctcttcctggtctttcggcgtctagactgatg
gccggtaatagcggatccggattaggtgttcagggacagaaccgcatgatgggtggactt
cctcaaggatctcaggtcatgtctatgctggggaattcctaccatactggtggcggccaa
ctttcgcagaaccatcttcagtcagttaacaatatgatgctcggtgatcactctaacgac
agttcactttttgacatcaataacgatttcccccagctgacaagtcgtcctggttctgct
ggtggcactcaaggacaactcggttctttgaggaaacaaggtttaggagtcccacttgcg
caacaaaatcaggagttccgcattcaaaatgaggacttcccagccctacctggatataaa
ggtggtagctctgattatccaatggacatgcatcagaaagaacaactccatgacaatgct
atgtcaatgatgcactcccaaaactttcctatgggtagatctggtggtttcaacttgggg
gaaacatattcatcacatcgtccacaacaacagccacaacatacttcctctactggtggg
ctacaaggtcttggcttgagacctctaaactctcccaatccagtttcaagcaacggttac
gaccagcttattcagcagtatcagcagcagagacaaaaccaatcccagtttcctgtgcaa
caaatgtcatccatgaaccagtttagagattctgagttgaaatcggctcaggcggaggca
gatcctttctgcttgcttggcttgctagaggtactaaacgggagcaaccctgagcttacc
tctcttgctcttggcatcgacttaacgacgctagggttggatttgaattcaactgggaaa
ctttacaagacctttgcttccccttggaccaatgaaccggcaaagactgaggtcgagttc
acggtaccaagttgttactacgcaacaccacctccacctctaacgagagctagtttcaaa
aggttctcctatgagttattgttctacacattttacagtatgccaaaagacgaagcacag
ttatacgcagcagatgaactttatgaaagaggttggttttaccacaaggaactcagatta
tggttcttcagagttggggagcctttggtaagaacagctgcatatgaaagaggaacatac
gagtgcctggatccaaactcgttcaaaacagtcagaaaggaacattttgttgtccagtac
gagcacatggaaaagagaccaagcttgctgcagcattga
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