Raphanus sativus (radish): 108847928
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Entry
108847928 CDS
T06014
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03440
Homologous recombination
rsz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108847928
03450 Non-homologous end-joining
108847928
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rsz03032
]
108847928
03400 DNA repair and recombination proteins [BR:
rsz03400
]
108847928
DNA replication proteins [BR:
rsz03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
108847928
DNA repair and recombination proteins [BR:
rsz03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
108847928
BRCA1-C complex
108847928
NHEJ (non-homologous end-joining)
MRX complex
108847928
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_15
SbcC_Walker_B
AAA_21
SMC_N
Rad50_zn_hook
AAA_29
ABC_tran
Motif
Other DBs
NCBI-GeneID:
108847928
NCBI-ProteinID:
XP_018476805
UniProt:
A0A6J0MYR2
LinkDB
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Position
3:complement(19409881..19418539)
Genome browser
AA seq
1316 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENKNVITFFRPLTLIVGSNGAGKTTIIECLKVSCTGELPPNAR
SGHSFIHDPKVAGETETKAQIKLRFKTAAGKDVVCIRSFQLTQKASKMEYKAIESVLQTI
NPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDESNWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKDQAQEIKTFKLKLENLQTLKDAAYKLRESITQDQERTESSKA
QMSEMENSIQKVDAEVHNKEMMLKDLRKLQDQVSRKTAERSTLFKEQQRQYAALPEENED
TIEELKEWKSKFEERIALLETKIRKMEREMDDTQTTISSLHNAKTNYMLEISKLQTEAEA
HMLLKNERDTSIQKTFSHHNLGNVPSTPFSTEVVLNLTNRIKSRLGEFEMDLVDKKKSNE
TALSTAWDCYMDANDRWKSIEAQKRAKDDIKTGISKRIEEKEIERDSFEFEISNVDVQQI
DEREKLVQVELERKSKQNSESGFESKIEQKQHEIYSMEHKIKTLNRERDVMAGDAEDRVK
LSLKKTELENLKKKHKKIIDECKDKVRGALKGRLPLEKDMKKEIVQSLRSVEREYGDLSL
KSREAEKEVNMLQMKIQEVNNSLSKHHKDTESRKRYIESKLQALKQESFTIDAYPRLLDS
AKDKRDYHKSKYNMATGMRQMFEPFEQVAREHHFCPCCERTFSAQEEDNFVKKQRAKAST
TGDHVKALAAESSNADSIFQQLDNLRSVFEEYTKLTDEIIPLAEKSLQEFTEELEQKSEA
LDDVLAISAQIKSDKDSVEALVQPLENADRLFQEIASYQKQIEDLEYKLDFRGHGVKTMQ
EIQSELSSLQSTKDKLHDELQKLRDEQIYMERDISCLQARWHALREEKAKAANLLRDVTK
AEEDLERLAEEKSQLDLDVKHLSEALGPLSKEKEQLLSVYNDIKVKRNHEYEELAEKKRN
YQQEVEALLKANSKINEYRELKKGERLNDIQEKQRAAESQLQSAESRKNEIAAELSKSKD
LMGNQDQLRRNIEDNLNYRTTKAQVEVLTGEIESLEEQILNIGGIPAVEAEISKILRERE
RLLSELNRCRGTVSVYESSISKNKVELKQTQYKDIDKRHFDQLIQLKTTEMANKDLDRYY
NALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYIRIHSDSEGAGTRSYSYRVLMQT
GDTELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNSESLAGALL
RIMEDRKGQENFQLIVITHDERFAQMIGQRQHAEKYYRVAKDDMQHSIIEAQEIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagtacagtcgataaaatgctgatcaagggtatcagaagcttcgaccctgaaaataag
aacgtcatcactttcttcaggcctctaaccctaatcgtcggctccaacggcgccggaaaa
actacgattatagagtgcttgaaggtatcttgtaccggagagctgcctcctaacgcgagg
tctggtcacagcttcattcatgaccctaaggtcgctggggaaacggagactaaagcacaa
attaagctgcggtttaagacagctgcagggaaggatgtggtatgtataaggtcatttcag
ttgacacaaaaggcttcaaagatggagtacaaggccattgagagtgtccttcaaaccatt
aatcctcacactggagagaaagtatgtctcagctacagatgcgctgacatggatagggag
ataccagctttgatgggtgtatctaaagctatattagaaaacgtcatatttgtgcaccaa
gatgagtctaactggccactgcaagatccttctactttgaaaaagaagtttgatgatatt
ttctcagccaccagatacacaaaggcgttggaagttattaagaaacttcacaaagatcaa
gctcaggagataaaaacgtttaagttgaagttggaaaatctgcagacgttgaaagatgct
gcttataagcttcgtgagagcattactcaagatcaagaaagaacagagtcttcaaaagct
cagatgtcggaaatggaaaacagcattcagaaagtggatgctgaagttcataataaggaa
atgatgttaaaagatctgagaaagctacaggaccaagtttcaagaaaaactgccgaaagg
agcaccttatttaaggaacagcagagacagtatgcagcattacccgaggaaaatgaagat
actattgaagaactgaaagaatggaaaagcaagtttgaagaaaggattgcgcttttggag
accaaaattcgaaagatggagagagagatggatgacacacaaactacaatttcttctctt
cacaatgcaaaaaccaactatatgctggagattagcaagctacaaacagaagctgaagct
catatgctgctgaagaatgaaagagatacttccatccagaaaacattttcccatcacaat
ttgggaaatgttcctagtacccctttcagtactgaggtagttttgaatctcacaaatcga
ataaaatcaagactgggtgagtttgagatggacttggtggataagaagaaatcaaatgag
actgctctaagtacggcttgggattgctatatggatgctaatgaccgttggaaaagcatc
gaagctcagaaacgagctaaagatgatatcaagacaggcatatcaaaacgcatagaagag
aaagaaatcgagcgtgattcatttgaattcgaaatatccaatgtggatgttcaacaaatt
gatgaacgagaaaaacttgtgcaagttgagcttgagagaaagtcaaaacaaaattctgaa
agcggatttgaatccaaaatagagcagaaacagcatgaaatatacagcatggagcataaa
atcaagactctcaatcgagaaagagacgttatggctggtgatgctgaggatagagtgaaa
ttgtctttgaagaagacggagctggagaacctcaagaagaaacacaaaaagataatcgat
gaatgcaaggataaagttcgaggggcgctgaaggggagattgccacttgagaaggatatg
aagaaggaaatagttcaatctctaaggtcagttgaaagggaatatggtgacctgagctta
aaatcccgagaagcagaaaaggaggtgaacatgttgcagatgaagattcaagaagtaaac
aatagcctatccaagcatcacaaggatacagaatcaagaaagagatacattgagtccaag
cttcaagcgttaaaacaggaatcatttaccattgacgcttatcccagattgttggattcg
gctaaggacaaacgagactaccacaaaagcaaatataacatggcaactggtatgcgccag
atgtttgagccatttgagcaggtagcccgtgaacatcatttttgtccttgctgcgagcgc
actttttcagctcaagaagaggacaacttcgttaagaagcaaagggctaaggcttcaaca
acgggggatcatgtcaaagcattagcagcagagtcttcaaatgctgactctatctttcag
cagctggataaccttcgctcagtttttgaagagtacacgaaactaactgatgaaattatt
cctctcgccgagaaatctttgcaagaatttacagaagagctggagcagaagtccgaagcc
cttgatgatgtattggcaatctcagcgcagataaaatctgacaaagactcagttgaagca
ttggtgcagcccctggaaaatgctgataggcttttccaggaaatcgcatcctaccagaag
caaattgaagatctcgaatataaacttgatttcaggggtcatggtgttaaaactatgcaa
gaaatccaatcagaactaagtagtctccaaagcaccaaggataaattgcacgatgagctg
cagaaattaagggatgaacagatttacatggaacgtgatatatcatgcctccaagccaga
tggcatgcactaagagaggagaaggctaaggctgccaatttgttacgcgacgttacgaag
gcagaagaggacctagagcgtttagccgaggagaaaagtcaacttgacctagacgttaag
catttgtccgaggctttgggccctttgtccaaggaaaaggagcagttactgagtgtttac
aatgatattaaagttaaacgtaatcacgagtatgaagaacttgcggagaaaaagagaaac
taccaacaagaagttgaggcattgctgaaggccaactctaagattaatgagtatcgtgag
ctgaagaaaggagagcggttaaatgatattcaagaaaagcagcgggcagctgaatcccag
cttcagagcgccgaatctagaaagaatgaaattgcagctgaactgagcaaaagtaaagac
ttgatggggaatcaagatcaactaagaagaaatatagaggataacttgaactaccgtaca
acaaaagcacaggtcgaggtgcttacaggcgagatcgaatcactggaagagcaaattttg
aatattggtgggatacccgcagttgaagctgaaatttcaaagatattgcgggaaagagaa
agacttctttcagagttgaatcggtgtcgtggaacagtgtctgtttatgagagcagtatc
tcaaagaacaaagtagagctaaaacagacacaatacaaggacatcgataagcggcacttt
gatcaactgatccagctaaagacaactgaaatggcaaataaggacttggatagatactac
aacgcccttgacaaagcactgatgcgcttccacacaatgaaaatggaggaaataaataag
attataagggaactgtggcagcagacatacagaggtcaagacatcgattacataagaata
cactcagattccgagggtgcaggcactcgctcttacagctacagggttcttatgcagact
ggtgatacagaacttgaaatgagaggaagatgcagtgctggtcaaaaggttcttgcttca
ttgataataaggttggcattggccgagacattttgcctaaactgtggaatattagcactt
gatgagccaactacaaacttggatggtcctaattcagaatctcttgcaggagctcttctt
aggatcatggaggatagaaagggacaagagaattttcagctcatagtcattacccacgac
gaacgctttgctcaaatgattggccaacggcaacatgctgaaaaatattaccgagtggcg
aaagatgatatgcaacacagcataatcgaggcccaagagatctttgattaa
DBGET
integrated database retrieval system
