Raphanus sativus (radish): 108847935
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Entry
108847935 CDS
T06014
Name
(RefSeq) uncharacterized protein LOC108847935
KO
K14554
U3 small nucleolar RNA-associated protein 21
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
108847935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rsz03009
]
108847935
Ribosome biogenesis [BR:
rsz03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
108847935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Utp21
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_C
Beta-prop_HPS5
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_WDR19_1st
NBCH_WD40
Beta-prop_VPS8
Beta-prop_SPT8
Beta-prop_LRRK2
PEP5_VPS11_N
Beta-prop_WDR75_2nd
WD40_RFWD3
WD40_like
Beta-prop_SCAP
VID27
Utp12
MIOS_WD40
DUF4196
Motif
Other DBs
NCBI-GeneID:
108847935
NCBI-ProteinID:
XP_018476812
UniProt:
A0A6J0MWH7
LinkDB
All DBs
Position
3:2427432..2432903
Genome browser
AA seq
908 aa
AA seq
DB search
MGIFEPFRAIGYITSTVPFSVQRLGTETFVTVSVGKAFQIYNCAKLNLVIISPQLPKKIR
ALASYRDFTFAAFGNEIAVFKRAHQVATWSKHAAKVDLLLVFGEHVLSLDVEGNMFMWAF
KGIEEHLAPIGHVELGEKFTPTCIVHPDTYLNKVLVGSQEGSLQLWNINTKKMLYQFKGW
GSSVCCCVSSPALDVVAIGCADGKIHVHNLKLDQEIVTFEHASRGAVTALSFSTDGRPLL
ASGGSSGVISVWNLNKRRLQSVIRDAHDSSVISLNFLANEPVLMSASADNSLKMWIFDTN
DGDPRLLRFRSGHSAPPKCIRFYSNGRHILSAGQDRAFRLFSVIQEQQSRELSQRHISRR
AKKLRLKDEELKLKPVIAFDCAEIRERDWCNVVTCHMDTSEAYVWRLQNFVLGEHILKPC
PENPTPIKACAISACGNFAVVGTASGWIERFNLQSGISRGSYLDKSEKRSYSHDGEVIGV
ACDSTNTLMISAGYHGDVKVWDFKKRELKSRWDVGCSLVKIVYHRVNGLLATVANDFVIR
LYDVVALRMVREFRGHTDRITDMCFSEDGKWLLSSSMDGSLRIWDVILAKQIDGVHVDVP
ITALSLSPNMDILATAHSDQNGVYLWVNQSMYSGAPNVDSYASGKNVVNVRLPSVSALRS
SEADDDEKTQVSENSESQTAASFLISPEQIPELVTLSLLPKSQWQSLINLDIIKARNKPI
EPPKKPEKAPFFLPSIPSLSGDIVFKSNESDNDEEDEDKNSKNSMKKFDALESPFSKLLK
SSWDSKNFSDFTDYIKGLSPSALDIELRMLEIIDEDVEEELIQRPEFISIGQLLDYLIHE
ITCRNNFEFMQAVMRLFLKIHGETIRCHPSLQEKAKQLLETQSLVWQKMDKLFQSTRCIV
TFLSNSQF
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atggggattttcgaaccgtttagagcaataggatacataacgagcaccgttcctttctcc
gttcagcgattgggcaccgagaccttcgtcaccgtcagcgtcggcaaagctttccagatt
tacaactgtgccaagcttaacctagtcattatcagtcctcaactcccaaagaaaatcaga
gctctagcttcttaccgtgacttcacttttgctgcttttggtaatgaaatcgctgttttc
aaacgtgctcatcaggtagcaacttggagcaagcatgctgctaaagtcgacctgcttctc
gtgtttggagaacacgtcctaagtcttgacgttgaggggaacatgttcatgtgggcattc
aaaggaatcgaagaacatctagctcctattggacatgttgaacttggtgaaaagttcact
cctacttgtattgttcaccctgatacttatttgaacaaggttctcgtcgggagccaagag
ggttcactgcagctatggaacataaatactaagaagatgctctatcagtttaagggttgg
ggttcatctgtctgctgttgtgtttcatcccctgctttggatgttgttgccatcggttgt
gctgatggaaagatccatgttcacaacttgaaattagaccaagagattgtaacgtttgaa
cacgcctcgcgaggtgctgttactgctctatccttcagtacagatgggcgtccccttctt
gcatctggaggttcttctggtgtgattagcgtctggaatcttaacaagagaaggcttcag
tcggtcatcagagatgcacatgacagctctgtaatctcattgaactttttagcaaatgaa
cctgtgctaatgagtgcatcagcagacaactcactcaaaatgtggatttttgacacaaat
gatggtgatcctcgtctactacgcttccggtctgggcatagtgccccacccaagtgtatc
aggttttactctaatggacggcacattttgtctgctggccaggatcgggccttccgcctg
ttctctgtcatccaggagcaacaaagtagagagctatctcaaaggcacatatccaggcga
gccaaaaaactccgtttgaaggatgaagagctgaaactgaagcctgttattgcatttgat
tgcgctgaaattagggagcgtgattggtgcaacgtggttacatgccatatggatacatca
gaagcatatgtatggagacttcagaactttgttcttggagaacatatcctcaaaccatgc
cctgaaaatccaacaccaatcaaggcttgtgcaatcagtgcgtgtggaaactttgcagtt
gttggaactgccagtggctggattgagagattcaatctccaatctggaatcagccgtggt
agctacttggataagtcagagaaaagaagttactctcatgatggtgaagtgattggagtt
gcttgcgactccacaaacacactcatgataagtgcaggataccatggtgatgtaaaggtt
tgggatttcaaaaagagggaactgaagtcccgatgggatgttggatgttcattggttaaa
attgtttaccaccgtgtaaatggtcttttggctacggtggcaaatgattttgtcatacgc
ttgtatgatgttgttgcactgagaatggtccgtgagtttagaggccatacagaccgtata
acggatatgtgctttagtgaggatggcaagtggctcctctcatctagcatggatggaagt
ctcagaatctgggatgttatactggcgaaacagattgatggagtgcatgttgatgtgcca
ataacagcattgtctttatcaccgaacatggacattttagcaacggctcattctgatcag
aatggggtctacttgtgggttaaccaatccatgtactctggagctccaaatgttgattcc
tatgcaagtgggaagaatgtggtgaatgttagattgccttcagtctctgcgttgagatct
tctgaagctgatgatgatgagaagactcaagtttcagaaaattctgaaagccaaactgct
gccagcttcttgatttcccctgaacagatcccagagcttgttactctgtctcttttgcca
aaaagccagtggcaaagcttgatcaacttggatataatcaaggcccggaacaaaccaata
gagcctccaaagaaacctgagaaggctccttttttcttgccctcgattccatctctgtct
ggagatatagtgttcaagtcaaatgaatcagacaatgatgaagaggatgaggacaagaat
tccaagaatagcatgaagaagtttgatgcattggaatctccattctcaaagcttctcaag
tcctcatgggattcaaagaacttttcagatttcacagattacatcaagggtttatcccca
tcagctctggacattgagctacgtatgcttgaaatcatcgatgaagatgttgaagaagag
cttatccaaagacctgagtttatatcaattgggcagcttctggattacctcatccatgag
atcacttgcagaaacaactttgagtttatgcaggcagttatgagattgtttctgaagatc
catggtgagacaataaggtgtcacccgagtttacaagagaaggcaaagcagctgttagaa
actcagagtttggtgtggcagaagatggacaagcttttccaaagcacaagatgcatagtt
actttccttagcaattctcagttttga
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