Raphanus sativus (radish): 108848400
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Entry
108848400 CDS
T06014
Name
(RefSeq) LOW QUALITY PROTEIN: RNA-binding KH domain-containing protein PEPPER
KO
K21444
poly(rC)-binding protein 3/4
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108848400
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
108848400
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Gene cluster
GFIT
Motif
Pfam:
KH_1
KH_2
KH-I_KHDC4-BBP
KH_5
KH_Vigilin
KH_PARP14_5
Motif
Other DBs
NCBI-GeneID:
108848400
NCBI-ProteinID:
XP_018477258
UniProt:
A0A6J0MZU5
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Position
4:4116681..4119153
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AA seq
490 aa
AA seq
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MAAVADSAENGATNFPENQTLTPSESTGPSLLNETSGAFPESNQPDSLAAETAPDAERWP
GWPGDCVFRVIVPVSKVGAIIGRKGDIIRKMCEETRARIKVLDGPTTTPDRIVMISAKEE
PEAYMSPAMEAVVRVFRRVSGLPDSDDDEDLQNAASAFSSVRLLVASSQAINLIGKQGSS
IKSIVENSGASVRILSDEDTPFYAAKDERIVDLQGEALKIVKALEGVVGHLRKFLVDHSV
VPLFEKQYLARVSQVRQEEPLANNQSSLNAALSNAIESELLARREALFLERDPRVESFVQ
PSGVSIYSQDPAMSARHSPGLSRVSAAFVTQVSQTMQIPFSYAEDIIGLEGANIAFIRRR
SGCTITIQESPHPDQITVEIKGTSSQVQTAQQLIQEFISNHKEPVSVSXGYARVDAGYVP
AYPPQLSNLQEPLSSSGYIGTETVQYRPTAYSQLAGPSASTYTPSLNGQTYGTEYRPASD
VGGGYNTYNL
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgtcgccgattccgcggagaacggtgctacaaacttcccggagaatcaaacc
ctcacaccctcggaatccactggcccctcattgctcaacgaaacctccggcgccttcccc
gaatcgaatcaaccggatagcttagcggccgagactgcccccgatgcggagagatggcca
ggctggcctggggattgcgtgtttcgcgtgatcgttccggtatctaaagtcggagctata
atcggacgcaaaggagatatcatcaggaagatgtgcgaggagactcgcgctcgcatcaaa
gtcctcgacggtcccactaccactcctgatcgcatcgtgatgatatctgcaaaggaagag
ccagaggcctacatgtcccctgcgatggaagcagtcgtacgggtgttcagacgagtctcg
gggttgcctgatagtgatgatgatgaggatcttcaaaacgctgcaagtgccttctcttca
gtgcgtttattagttgcatcttctcaggcgattaatttgattgggaaacaaggatcctct
attaaatctatagtagagaactctggtgcatcagttcgcattttatcagacgaggacaca
ccgttttatgctgcaaaagatgagaggatagtggatttgcagggggaagctttaaagatt
gtaaaagcgttagaaggggttgtaggacacctaaggaaatttctagtcgaccattctgtg
gttcctctcttcgagaagcaatatctagctagagtctctcaagttcgtcaggaagaaccg
ttagctaacaaccagtcatctctcaatgctgctttgtcaaatgcaatcgagtctgagctc
ttggcacggagggaagctctgtttttggagcgggatcctcgggtggagtcatttgttcag
ccttctggagtttctatctacagtcaggatcctgcaatgtctgctagacactctcctggc
ctttctcgagtttctgctgcttttgttacacaggtatctcaaacgatgcaaataccgttc
tcctatgcggaggatattatcggtttagaaggagctaatatagccttcatccgtagaaga
agcggatgtaccataaccattcaagagagtccacatcctgatcaaatcacagtggaaatc
aaaggcacatcttctcaagtacaaactgctcagcaactaattcaagagttcatcagcaat
cacaaggaaccggtttcggtttcanggggatatgctagagtcgacgctggttatgtacct
gcatatcctcctcagctgagcaaccttcaagagccgctctcgagcagcggctacattggc
acagagacggtgcagtatagaccaacagcatactctcagcttgcgggtccgtcggcgtcg
acctacacgccgtcactgaatgggcaaacttatggaacggaatatagaccggcttctgat
gttggtggtggctacaacacttacaatttatga
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