Raphanus sativus (radish): 108848421
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Entry
108848421 CDS
T06014
Name
(RefSeq) SWI/SNF complex subunit SWI3B
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108848421
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsz03021
]
108848421
03036 Chromosome and associated proteins [BR:
rsz03036
]
108848421
Transcription machinery [BR:
rsz03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108848421
Chromosome and associated proteins [BR:
rsz03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
108848421
PBAF complex
108848421
GBAF(ncBAF) complex
108848421
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
Myb_DNA-binding
SWIRM-assoc_1
Myb_DNA-bind_6
Myb_DNA-bind_7
NEXCaM_BD
Motif
Other DBs
NCBI-GeneID:
108848421
NCBI-ProteinID:
XP_018477285
UniProt:
A0A6J0MXU2
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Position
4:38429193..38431686
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AA seq
458 aa
AA seq
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MATDAPIPGGSSEILPTTTPIIPETPSEISASSNSLQPPPPSSCIHIPSYSRWFSWTEIN
ECETRSLPEFFDSRSSSSKKNPRFYLYLRNSIIKQYRDEHPNRISFTDVRRTLVGDVVSI
RRVFDFLDAWGLINYSGSASSAKPLKWDDKEAVASSETTSTVKESAKRICNGCKSVCSVA
CFASEKYELTLCARCYVRGNYRVGINSSEFKRVELSEESKTGWSEKETLLLLEAVMHYGD
DWKKVATHVTGRTEKDCVAQFVKLPFGEQFAKDSDSEDALETFDQIKGSADPETEGKVKD
GSSSPDNKRMKLTPLADASNPIMAQAAFLSALAGTKVAEAAARAAVTALSDVDHEADKNT
GGDPNRQEINGNDSERAVAEAKSLVEKEEKEVDGAIREIVEVEMMKIRDRIVHFEKLDLE
MERSRKQLEEMKNLLFTDQLNIYFHTRRSRKAEDRAEC
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atggccacggacgctccaattcccggcggatctagcgagattctccccacaacaactccc
atcatccccgaaactccgtcggaaatctccgcatcttcgaactcccttcaaccgcctcct
ccttcctcttgcatccacatacctagctactctcgttggttttcgtggaccgagatcaac
gagtgcgaaacccgatccctaccggagttcttcgattcgagatcctcctcctcgaagaag
aaccctaggttttacctctacttgaggaactcgatcatcaagcagtacagagacgagcat
cctaacaggatcagcttcaccgacgttaggaggactctcgtcggcgacgttgtctctatt
cgccgcgtgttcgatttcctcgacgcttgggggcttatcaactactctggctccgcctcc
tctgctaagcctctcaagtgggatgacaaggaggccgttgcttcttctgagactacctcg
acggttaaggaatccgccaagaggatctgtaacggctgcaagtcggtgtgcagcgttgct
tgtttcgcctctgaaaagtatgagttgacattgtgtgctaggtgctatgttcgtggaaac
tatcgtgttggtattaactcctcggagtttaagagagttgagcttagcgaggagtcgaag
acggggtggtctgagaaggagactctactgctccttgaagcggttatgcactatggagac
gattggaagaaggttgcgacgcatgttactggtagaaccgagaaggattgtgttgctcag
tttgtcaagcttccgtttggggaacagtttgcgaaagactctgactctgaggatgctttg
gagacttttgatcagatcaagggctctgctgatcctgagactgaaggaaaagttaaagat
ggttcgtcttctcccgataataagcggatgaaattgacgcctcttgcagatgcaagcaac
cctattatggctcaggctgcttttctttcagctttggctggcacaaaagttgcagaagca
gcagctcgagctgcagtgacagctctatctgatgtagaccacgaggctgacaaaaacact
ggtggagacccaaatcgacaagagatcaatggtaacgactcagagagagctgttgctgaa
gctaaatctctggttgagaaggaagagaaagaagtagatggagccatcagagagattgta
gaagtagagatgatgaagattagagataggattgtacatttcgagaaattggatttggaa
atggagagaagccggaaacagttggaggagatgaagaacctgctgtttactgatcaatta
aacatctacttccacacaagaagatctaggaaagctgaagatagagcagagtgttag
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