Raphanus sativus (radish): 108848716
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Entry
108848716 CDS
T06014
Name
(RefSeq) double-strand break repair protein MRE11 isoform X3
KO
K10865
double-strand break repair protein MRE11
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03440
Homologous recombination
rsz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108848716
03450 Non-homologous end-joining
108848716
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rsz03032
]
108848716
03400 DNA repair and recombination proteins [BR:
rsz03400
]
108848716
DNA replication proteins [BR:
rsz03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
108848716
DNA repair and recombination proteins [BR:
rsz03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
108848716
BRCA1-C complex
108848716
NHEJ (non-homologous end-joining)
MRX complex
108848716
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mre11_DNA_bind
Metallophos
Motif
Other DBs
NCBI-GeneID:
108848716
NCBI-ProteinID:
XP_018477648
UniProt:
A0A6J0N0X2
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Position
9:complement(9339123..9359537)
Genome browser
AA seq
715 aa
AA seq
DB search
MSREDLSDTLRILVATDCHLGYMEKDEIRRHDSFKAFEEICSIAEDKQVDFLLLGGDLFH
ENKPSRTTLVKAIEILRRHCLNDKPVQFQVVSDQTVNFQNAFGHVNYEDPHFNVGLPVFS
IHGNHDDPAGVDNLSAIDILSACNLVNYFGKMNLGGSGVGQITLYPILMRKGSTTVALYG
LGNIRDERLNRMFQTPHAIQWMRPEVQEGCDVSDWFNILVLHQNRVKSNPKNAISEHFLP
RFLDFIVWGHEHECLIDPQEVSGMGFHITQPGSSVATSLIDGESKPKHVLLLEIKGNQYR
PTKIPLTSVRPFEYTEIVLKDEDDIDPNDQNSILEHLDKVVRDLIEKASKKAVNRSDIQL
PLVRIKVDYSGFMTINPQRFGQKYVGKVANPQDILIFSKASKKGQREGTIDDSERLRPEE
LNQQNIEALVAESNLKMEILPVNDLDVALQNFVNKDDKLAFYSCVQYNLQETRGKLAKDS
NAQKFEEDDLILKVGECLEERLKDRSTRASGSSQFLSTGLTSENLTKRSSGIANASFSDD
EDTTQISGSVPATRGRRGSSTAPSRGRAKAPTRGRGRGKASSAMKQTTLDGSLGLRQSQR
SASASFKSASTIVEDDVDSPSSEEAEPEDLNKVDSSSEEEENTRGKGRKRQATTKRGRGR
GTGTSKRGRKNESSSSLHRLLSSKDEDEDEDDEDIEKKLNRSQPRVTRNYGSLRR
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgtctagagaggatttgagtgatactcttcggatacttgtcgcaactgattgccacttg
ggatacatggagaaggatgaaataaggcgccacgattccttcaaggcttttgaagagatt
tgttctattgctgaggataaacaggtggacttcttactccttggaggtgatctttttcat
gagaataaaccctctagaactacgctagttaaggccattgagattcttcgtcgccattgc
cttaatgataaaccggtgcagtttcaagtggtcagcgaccagactgttaattttcaaaat
gcttttggtcatgtaaattatgaggatccacacttcaatgtaggcttgcccgtgtttagt
attcatggaaaccatgacgatccagctggagtggacaacctttctgcaattgatattctc
tcagcatgtaacctcgtgaattattttggaaagatgaatcttggtggctcaggtgttggc
cagattactctctacccaatacttatgagaaagggttcaacaactgtggctctgtatggt
ttaggaaacatcagggatgaacgtctcaacagaatgtttcagaccccacacgctatccag
tggatgaggcctgaagttcaagaaggatgtgacgtttctgactggttcaatattcttgtg
cttcatcaaaatagggtgaaatcaaaccccaaaaatgcaataagtgaacactttcttcca
cggtttctcgacttcattgtgtggggccatgagcatgaatgccttatcgacccccaggag
gtatctggaatgggcttccacatcacacaaccaggatcttctgtggcaacatcacttatt
gatggggaatcgaagccaaagcatgttcttctcttagaaatcaagggcaatcaatatcgt
cctacgaagatacctttgacatctgtgaggccttttgagtatacagagattgttttgaag
gatgaagatgatattgatccaaatgatcaaaactcaattctcgaacacttggataaagtg
gtcagagatctaatagaaaaagccagcaaaaaagctgtcaacagatcagatatccagctc
ccattggttcgaatcaaggtagattactctggatttatgacgataaatcctcaaaggttt
ggacagaaatatgtgggaaaggttgcaaatccccaggacattttaatattctccaaagct
tctaagaaaggtcaacgcgaaggcaccatcgatgattctgagcggctccgtccagaagaa
ctaaaccagcaaaatatagaagcactagtagctgaaagcaacctgaaaatggagatcctt
ccagttaacgatcttgacgttgctcttcaaaattttgtgaacaaggatgataaactagct
ttctactcgtgcgttcagtacaatcttcaagagactcgtggtaaacttgcaaaagattca
aatgcccagaaatttgaggaggacgatctgattcttaaagtgggagagtgcttagaggaa
cgcttgaaagataggtccactcgagccagtggctcctcgcagtttttatccactggattg
acatcagagaatttgacgaaaaggagcagtggcatcgcgaatgcttctttcagtgatgat
gaagacacgacacagatctctggttcagtgcctgccactagaggacggagaggttcatcc
actgctccatcccgtggtagagctaaagccccaaccagaggaagaggccgaggtaaggcc
tcaagtgcgatgaagcaaaccactcttgatggttctcttggtttgcgccagtctcaaaga
tctgcttcagcttccttcaagagtgcttctaccattgtagaagacgatgtagattctcct
tcaagtgaagaagcagagcctgaagatcttaacaaagttgacagcagttcggaggaggag
gagaacactagaggcaaaggacgtaaaagacaagctactactaagagaggcagaggtaga
ggtaccgggacatcaaaacgtggtagaaaaaacgaaagctcttcttcacttcataggctg
ctcagtagcaaagacgaagacgaggacgaagatgatgaagatattgaaaagaagctaaac
agatctcagcctcgggttacaaggaactatggatctctaagaagataa
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