Raphanus sativus (radish): 108848992
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Entry
108848992 CDS
T06014
Name
(RefSeq) cysteine protease ATG4b isoform X1
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
108848992
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rsz01002
]
108848992
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rsz04131
]
108848992
03029 Mitochondrial biogenesis [BR:
rsz03029
]
108848992
Peptidases and inhibitors [BR:
rsz01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
108848992
Membrane trafficking [BR:
rsz04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
108848992
Mitochondrial biogenesis [BR:
rsz03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
108848992
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C54
Motif
Other DBs
NCBI-GeneID:
108848992
NCBI-ProteinID:
XP_018477976
UniProt:
A0A6J0N1R7
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All DBs
Position
4:complement(48962688..48965760)
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AA seq
431 aa
AA seq
DB search
MKAMCDRFLPSKCSSSTADEKRDKSTLNGWTLIVNTASSMASGAIRRFQDRVLGPSRTGI
PSTTSEIWLLGVCYKISDAESSEDADADAGSVLDAFRQDFSSLILVTYRRGFEPIGDTTY
TSDVGWGCMLRSGQMLFAQALLIQRLGRSWRKRESEPPEEEYLEILELFGDSEASAFSIH
NLILAGESYGLAAGSWVGPYAVCRSWESLARKKREETEVKDRSCSMAVHIVSGSEDGERG
GAPILCIEDVAKTCLEYSKGETEWTSILLLVPLVLGLDKVNPRYIPSLIATFSFPQSLGI
LGGKPGASTYIVGVQEDKGFYLDPHDVQQVVTVNKETQDVDTSSYHCNTLRYVPLESLDP
SLALGFYCRDKDDFDDFCIRATKLAGDSNGAPLFTVTQSHRGGERGIAETSTVASSTEIS
GEEHEDDWQLL
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgaaggctatgtgtgatagatttcttccttcaaaatgttcttcgtcaaccgcagatgag
aaacgtgataaatccacacttaacggttggacactcattgtaaacacagcttcttctatg
gctagtggggctattaggaggtttcaagatcgtgttttagggcccagtaggaccggtatt
cccagcactacaagtgagatttggctactgggtgtctgttacaaaatctcagatgctgaa
tcctcagaagatgcagatgcagatgctggcagtgtgttggatgctttcagacaagacttt
tcgtccttaatactagtgacatatcgtagaggttttgagcctattggagacacaacttat
actagtgatgtgggttggggttgcatgcttagaagcggccagatgctctttgcacaggca
ttgctaattcaaaggttgggaagatcctggaggaaaagggaatctgagccgcctgaagag
gaatacttggagatcttagaactttttggtgattccgaggcttcagcgttttcgatacat
aatcttatactagctggagaatcttatggcttggctgctgggtcatgggtaggaccgtat
gcagtttgtcgatcatgggaatcattagctcggaagaaaagagaagaaactgaggtcaaa
gaccgctcgtgttccatggctgttcatatcgtttctggtagtgaagatggggagagaggt
ggagctccaattctctgtatagaagatgtcgccaaaacttgtttggaatattcaaaagga
gaaactgagtggacttcaattcttctcttggtcccactggttcttggacttgacaaagtg
aacccaaggtacattccatctctgatagccactttcagtttccctcaaagccttgggatt
ttgggtggcaaaccaggtgcatcaacttacatagttggagttcaagaagacaaaggtttc
taccttgacccacacgatgttcaacaggtagtgacagtgaacaaagaaactcaagatgtt
gacacatcgtcttaccattgcaatacacttcgttatgttccgttggagtcactagaccca
tcgctagctcttggattctattgccgggacaaagatgattttgatgatttctgtatccga
gcaacgaagctagcaggagactccaacggtgctcctttgttcacagtgactcaatctcac
agaggtggtgagcgtggaattgcagaaaccagcactgtggcatcatctacagagatatct
ggtgaggagcatgaagatgattggcaattactttga
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