Raphanus sativus (radish): 108849111
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Entry
108849111 CDS
T06014
Name
(RefSeq) serine/threonine-protein phosphatase PP1 isozyme 7
KO
K06269
serine/threonine-protein phosphatase PP1 catalytic subunit [EC:
3.1.3.16
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108849111
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
rsz01009
]
108849111
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsz03021
]
108849111
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108849111
03041 Spliceosome [BR:
rsz03041
]
108849111
Enzymes [BR:
rsz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
108849111
Protein phosphatases and associated proteins [BR:
rsz01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
Catalytic subunits
108849111
Transcription machinery [BR:
rsz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108849111
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
108849111
Spliceosome [BR:
rsz03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
108849111
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Metallophos
STPPase_N
Motif
Other DBs
NCBI-GeneID:
108849111
NCBI-ProteinID:
XP_018478120
UniProt:
A0A6J0N089
LinkDB
All DBs
Position
4:19495337..19498051
Genome browser
AA seq
311 aa
AA seq
DB search
MEAGALNSVINRLLEAREKPGKIVQLSETEIKQLCFVSRDIFLRQPNLLELEAPVKICGD
IHGQYPDLLRLFEHGGYPPRSNYLFLGDYVDRGKQSLETICLLLAYKIKFPENFFLLRGN
HESASINRIYGFYDECKRRFSVKIWRIFTDCFNCLPVAALIDDRILCMHGGLSPELRSLR
QIRDIRRPTDIPDRGLLCDLLWSDPDKNVRGWGSNDRGVSYTFGSDTVSEFLKRLDLDLI
CRAHQVVEDGFEFFANKQLVTIFSAPNYCGEFDNAGAMMSVDEDLICSFQILKPNEKKSK
FSFGSRGGVKN
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atggaagctggtgctttaaactcagtgatcaatagattgcttgaagctagagaaaaacca
ggaaagattgttcagttgtctgaaactgagatcaaacagctctgtttcgtctctagagat
atcttcttgagacaaccaaatctcttggaactcgaagctcctgttaagatatgcggggac
attcatggacaatacccggatctcttgagactattcgaacacgggggataccctcctcgc
tcaaactacttgtttcttggagattacgtggaccgtggcaagcaaagccttgaaacgatt
tgtctcttgctcgcttacaagatcaagttccctgaaaacttcttccttcttagaggaaac
cacgagagtgcctcgatcaatcgtatctacggcttctacgacgagtgtaaacgccgtttc
agtgtcaagatttggagaatcttcaccgattgcttcaactgtctccccgtggctgcactc
atcgatgacaggattctctgtatgcacggtgggctctccccggagctgcgcagcctgaga
cagattagggacattcgccgtccaactgatattcctgatcgtggtttactatgtgatctc
ttgtggtctgaccctgataaaaacgttagaggatggggttctaacgaccgtggagtttcc
tacacttttggatcggatacagtttctgagtttctcaaaagactcgatcttgacctaatc
tgtagggctcatcaggttgttgaagatgggtttgagttctttgctaataagcagctcgtg
acgatattctcagcgccgaattactgtggagagttcgacaatgcaggtgcgatgatgagt
gtagacgaggatttgatttgctcttttcagatcttaaaacctaatgagaagaaatcaaaa
ttcagcttcggaagcagaggtggtgttaaaaactag
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