KEGG   Raphanus sativus (radish): 108849140
Entry
108849140         CDS       T06014                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein isoform X1
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108849140
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rsz03041]
    108849140
Spliceosome [BR:rsz03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    108849140
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz EIF3I Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd WDR55 WD40_MABP1-WDR62_1st Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_EML Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_IFT122_1st ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_WDR19_1st PRP4 Beta-prop_EIPR1 Beta-prop_SCAP Beta-prop_DCAF4 WD_LRWD1 Beta-prop_Vps41 Beta-prop_SPT8 WD40_like STELLO
Other DBs
NCBI-GeneID: 108849140
NCBI-ProteinID: XP_018478151
UniProt: A0A6J0N2D3
LinkDB
Position
4:complement(41672963..41675792)
AA seq 534 aa
MEPNNDDNVSFTAAPVPGVSALPPPPMAPIPVVQHPPLARPPTFRPPQNGGARASDSDSE
SEDEHYVISEESRQVRERQEKAMQELLIKRRAAAIAVPTNDKSVRDRLRRLGDPITLFGE
QEMERRARLAQLMARLDIGGQLDRLLQAYEEDAAPRDEVDEEELQYPFFTEGPRALREAR
IEIARFSIKRAAVRIQRAKRRRDDPDEDVEAETKWALKQAKGMVLDCSNFGDDRPLTGCS
FSRDGKILATCSLSGVTKLWEMPQVTNTISVLKDHKERATDVVFSPVNDILATASADRTA
KLWRTDGTLLKTFEGHLDRLARVAFHPSGRYLGTTSFDKTWRLWDVNTGAELLLQEGHSR
SVYGIAFQQDGALAASSGLDSLARVWDLRTGRSILVFQGHIKPVLTVNFSPNGYHLASGG
EDNQCRIWDLRMRKSLYIIPAHANLVSQVKYEPQEGYFLATASYDMKVNIWSGRDFSLVK
SLAGHESKVASLDITADSSCIATVSHDRTIKLWTSSSNEEEEDDEGRETMDVDL
NT seq 1605 nt   +upstreamnt  +downstreamnt
atggaacccaacaatgacgataatgtttcatttacagcagctccagttccaggcgtctct
gcccttcctcctccaccaatggctcctataccagtagttcaacatcctccacttgcccgc
ccacctacctttaggccacctcaaaacggtggagcgagagctagcgactcggactctgaa
tcagaggatgaacattatgtaatatccgaagagagtaggcaggtcagggaaagacaagag
aaggcaatgcaggagctgctgataaagcgccgtgctgctgctatcgcggtgccaacaaac
gacaagtccgttagagaccgacttagacggcttggtgaccccattactctgtttggggag
caggagatggagagaagagctaggttggctcagcttatggctaggcttgatatcggtgga
cagctggatagactgctccaagcttacgaagaagatgcggctccgagagatgaagtggac
gaggaagaacttcagtacccgtttttcacggaaggtccaagggcgcttagagaggctagg
atagagattgctagattctctatcaagagagctgctgtgaggattcaacgtgcaaagcgg
aggagggatgatccagatgaagatgttgaggcagagactaaatgggctttgaagcaggct
aaaggcatggttcttgattgcagtaactttggtgatgatcgtcctctaactggctgctcc
ttctcaagggatggaaagatacttgccacatgttctctgagtggagttactaaactatgg
gagatgcctcaagttacaaacacgatttctgtcttgaaggatcacaaagaacgtgcaact
gatgtagtgttctcccctgtgaatgatattctagcaactgcttctgctgatcgaaccgct
aagctgtggagaaccgacggaacactcctgaaaacttttgaaggtcatttagatcgcctt
gcacgtgttgccttccacccgtcagggaggtacctagggacaacaagctttgacaaaaca
tggagattgtgggatgtgaacacaggagcagagctgcttttgcaagaaggtcacagtcgc
agcgtctacgggattgcatttcaacaagatggagccttagcagcttcctctgggcttgat
tcacttgcgcgggtttgggatctccgcactggtaggagtattctcgtattccaaggacat
atcaaaccggttctcacagtgaatttctctccgaatggctatcacttagcatctggtggt
gaggataatcaatgccgtatttgggatttaagaatgagaaagtcattgtacatcatacca
gctcatgctaaccttgtgtctcaagttaagtatgaaccacaagaaggctacttcctggcc
actgcatcatacgacatgaaagtcaatatatggtcaggtagagatttctcgcttgttaaa
agcttagcaggacacgagtcaaaagtcgcttctctagatatcactgcagatagctcttgc
atcgcaactgtatcacatgaccgtaccatcaagctttggacaagcagtagcaacgaagaa
gaagaagacgacgaaggccgagaaacaatggacgtagatctctag

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