KEGG   Raphanus sativus (radish): 108849395
Entry
108849395         CDS       T06014                                 
Name
(RefSeq) small RNA degrading nuclease 5
  KO
K14570  RNA exonuclease [EC:3.1.-.-]
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    108849395
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:rsz03009]
    108849395
Ribosome biogenesis [BR:rsz03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    108849395
SSDB
Motif
Pfam: RNase_T DUF8085 DEATH_SH3BP4
Other DBs
NCBI-GeneID: 108849395
NCBI-ProteinID: XP_018478445
UniProt: A0A6J0N170
LinkDB
Position
4:complement(10554724..10557952)
AA seq 568 aa
MTSSKRKRDAGAAVEDSADGSDSGNSFFDIYGPEAKPELVFKTPETKTLNLQDVQGLVTW
VLAEGFMPNWVFIKNKPLIPKVVMLYLPGLDAALYLSQSKSLANLKSCCGNPIPLLALSC
VVDEMKTIDTLLTCKGKKKKNVTHSLEPPLLESKPEACNLVAKSFIDLTKDIPFPVTYYT
LNQREMERNGYNFKTEFISTLPAPSESSPHEILALDCEMCTTKDGLELTRVTLVDIHGQV
LLDKLVKPTNHITDYLTMYSGITAKMMEGVTTTIKDIQEEFLKLVFKETVLVGHSLENDL
YSLKISHNLVIDTAVLYKHPRSGSYKPKLRVLTKKFLAREIQMSESGHDSVEDAKAAMDL
ALMKIKYGPDFGSSPELIRKKLLDILNESGKTTSVVDSMNIVKRYASESSNSVPVSSDDE
ALSKAMKEVKKKGSQFVWTQFSELNTHFQSRADDPEKLNSRLAEKISLLTCSDDTEDIKK
RRKSKVSLETKEILKKMDERVSALHAALPTNAMFIVCTGHGDTSTVHRVRKMLKDESEIE
FSREKVVKVLEELQAQAEVALCFVGIKQ
NT seq 1707 nt   +upstreamnt  +downstreamnt
atgacgtcctcgaagcgaaagcgcgacgccggagccgccgtggaagatagtgccgacggt
agcgattcggggaacagtttcttcgatatatatggaccggaagcgaaaccagaactcgtt
tttaagactccggaaacaaaaacactgaacttacaagatgttcagggacttgtgacatgg
gttcttgcagaaggctttatgcctaattgggtattcatcaagaacaagcctctgattcca
aaggttgttatgctctaccttcctggattggatgcagctttgtacctatcacagtctaaa
tcacttgctaatttgaaatcatgctgtggcaatcctatacctcttttagctttgagctgt
gtagttgatgagatgaagacgatcgataccctccttacttgcaagggtaaaaagaagaaa
aacgttactcattcactggaaccacctctcctagaatctaagccagaagcttgcaatctg
gtggcgaaatcgttcatcgatctcacaaaagatataccattccctgttacatactatact
ctaaaccaaagagaaatggaacgaaatggatacaattttaagacagagtttatttctaca
cttcctgcaccatctgaatcatctccccatgaaattttagctcttgattgcgagatgtgt
actacaaaagatggtttggagttgacaagagtgacgcttgtggatatccatggacaggtt
ctattagataaattagtcaaaccaacaaatcatattaccgattaccttacaatgtatagc
ggaataacagctaagatgatggagggagttacaacaactatcaaagacattcaggaagag
ttcttgaagctggttttcaaagagacagtattagtcggacactcgttggagaatgacttg
tattctctgaagatctctcataacctggtgattgacactgcagtgctatacaagcatcca
cggtctggatcttacaaacccaaacttcgagttttaacgaaaaagtttctcgctagagag
atacagatgtctgaatcgggacacgacagcgtcgaggatgcaaaggcagccatggatttg
gcactaatgaagataaaatatggacctgactttggttcatcaccggaattgataaggaag
aagctcctcgacattttaaacgagagcgggaaaaccacttctgttgtagacagtatgaac
atcgtaaagcgatatgcttctgagtcatcaaattcagttccagtttcttctgatgacgaa
gcactttcaaaggccatgaaggaggtaaagaagaaggggtcacaattcgtttggacacaa
ttctcagaactcaatacacatttccagagcagagcggatgatccagagaaactaaactcc
agactagcagagaagatctcattgctgacgtgtagcgatgatacagaagacatcaagaaa
cgccgcaaaagcaaggtatcacttgaaacgaaggaaatcttgaagaagatggatgagaga
gtcagtgcccttcacgctgcattacccacaaatgcaatgtttatagtttgtaccggacat
ggagacacatccactgtacacagagtgcggaaaatgcttaaagacgagagtgaaattgag
tttagccgtgagaaagttgtgaaggttcttgaagagcttcaagcacaagccgaagttgcc
ctctgttttgttggtatcaaacaataa

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