Raphanus sativus (radish): 108849395
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Entry
108849395 CDS
T06014
Name
(RefSeq) small RNA degrading nuclease 5
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
108849395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rsz03009
]
108849395
Ribosome biogenesis [BR:
rsz03009
]
Eukaryotic type
Pre-60S particles
RNases
108849395
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Ortholog
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GFIT
Motif
Pfam:
RNase_T
DUF8085
DEATH_SH3BP4
Motif
Other DBs
NCBI-GeneID:
108849395
NCBI-ProteinID:
XP_018478445
UniProt:
A0A6J0N170
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Position
4:complement(10554724..10557952)
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AA seq
568 aa
AA seq
DB search
MTSSKRKRDAGAAVEDSADGSDSGNSFFDIYGPEAKPELVFKTPETKTLNLQDVQGLVTW
VLAEGFMPNWVFIKNKPLIPKVVMLYLPGLDAALYLSQSKSLANLKSCCGNPIPLLALSC
VVDEMKTIDTLLTCKGKKKKNVTHSLEPPLLESKPEACNLVAKSFIDLTKDIPFPVTYYT
LNQREMERNGYNFKTEFISTLPAPSESSPHEILALDCEMCTTKDGLELTRVTLVDIHGQV
LLDKLVKPTNHITDYLTMYSGITAKMMEGVTTTIKDIQEEFLKLVFKETVLVGHSLENDL
YSLKISHNLVIDTAVLYKHPRSGSYKPKLRVLTKKFLAREIQMSESGHDSVEDAKAAMDL
ALMKIKYGPDFGSSPELIRKKLLDILNESGKTTSVVDSMNIVKRYASESSNSVPVSSDDE
ALSKAMKEVKKKGSQFVWTQFSELNTHFQSRADDPEKLNSRLAEKISLLTCSDDTEDIKK
RRKSKVSLETKEILKKMDERVSALHAALPTNAMFIVCTGHGDTSTVHRVRKMLKDESEIE
FSREKVVKVLEELQAQAEVALCFVGIKQ
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcctcgaagcgaaagcgcgacgccggagccgccgtggaagatagtgccgacggt
agcgattcggggaacagtttcttcgatatatatggaccggaagcgaaaccagaactcgtt
tttaagactccggaaacaaaaacactgaacttacaagatgttcagggacttgtgacatgg
gttcttgcagaaggctttatgcctaattgggtattcatcaagaacaagcctctgattcca
aaggttgttatgctctaccttcctggattggatgcagctttgtacctatcacagtctaaa
tcacttgctaatttgaaatcatgctgtggcaatcctatacctcttttagctttgagctgt
gtagttgatgagatgaagacgatcgataccctccttacttgcaagggtaaaaagaagaaa
aacgttactcattcactggaaccacctctcctagaatctaagccagaagcttgcaatctg
gtggcgaaatcgttcatcgatctcacaaaagatataccattccctgttacatactatact
ctaaaccaaagagaaatggaacgaaatggatacaattttaagacagagtttatttctaca
cttcctgcaccatctgaatcatctccccatgaaattttagctcttgattgcgagatgtgt
actacaaaagatggtttggagttgacaagagtgacgcttgtggatatccatggacaggtt
ctattagataaattagtcaaaccaacaaatcatattaccgattaccttacaatgtatagc
ggaataacagctaagatgatggagggagttacaacaactatcaaagacattcaggaagag
ttcttgaagctggttttcaaagagacagtattagtcggacactcgttggagaatgacttg
tattctctgaagatctctcataacctggtgattgacactgcagtgctatacaagcatcca
cggtctggatcttacaaacccaaacttcgagttttaacgaaaaagtttctcgctagagag
atacagatgtctgaatcgggacacgacagcgtcgaggatgcaaaggcagccatggatttg
gcactaatgaagataaaatatggacctgactttggttcatcaccggaattgataaggaag
aagctcctcgacattttaaacgagagcgggaaaaccacttctgttgtagacagtatgaac
atcgtaaagcgatatgcttctgagtcatcaaattcagttccagtttcttctgatgacgaa
gcactttcaaaggccatgaaggaggtaaagaagaaggggtcacaattcgtttggacacaa
ttctcagaactcaatacacatttccagagcagagcggatgatccagagaaactaaactcc
agactagcagagaagatctcattgctgacgtgtagcgatgatacagaagacatcaagaaa
cgccgcaaaagcaaggtatcacttgaaacgaaggaaatcttgaagaagatggatgagaga
gtcagtgcccttcacgctgcattacccacaaatgcaatgtttatagtttgtaccggacat
ggagacacatccactgtacacagagtgcggaaaatgcttaaagacgagagtgaaattgag
tttagccgtgagaaagttgtgaaggttcttgaagagcttcaagcacaagccgaagttgcc
ctctgttttgttggtatcaaacaataa
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