KEGG   Raphanus sativus (radish): 108849712
Entry
108849712         CDS       T06014                                 
Name
(RefSeq) protein transport protein SEC13 homolog B
  KO
K14004  protein transport protein SEC13
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03013  Nucleocytoplasmic transport
rsz04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    108849712
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    108849712
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rsz03019]
    108849712
   04131 Membrane trafficking [BR:rsz04131]
    108849712
Messenger RNA biogenesis [BR:rsz03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     108849712
Membrane trafficking [BR:rsz04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    108849712
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    108849712
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    108849712
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_Prp19 WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_RIG_2nd WD40_Gbeta Beta-prop_TEP1_2nd Beta-prop_EIPR1 WDR55 Beta-prop_WDR3_2nd ANAPC4_WD40 Beta-prop_IFT122_1st EIF3I Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd NBCH_WD40 Beta-prop_IFT140_1st Beta-prop_WDR36-Utp21_1st Beta-prop_WDR36-Utp21_2nd WD40_RFWD3 Beta-prop_DCAF12
Other DBs
NCBI-GeneID: 108849712
NCBI-ProteinID: XP_018478805
UniProt: A0A6J0N424
LinkDB
Position
4:36758697..36760394
AA seq 304 aa
MSGQKIETGHEDMIHDVQMDYYGKKVATASSDCTIKITGVTNNGGGSQHHLATLTGHRGP
VWQVAWAHPKFGSILASCSYDGQVILWKEGSQNQWTQAHVFTDHKSSVNSIAWAPYELGL
SLACGSSDGNVSVFTARADGGWDTAKIEQAHPVGVTSVSWAPSTSPGALVTSSSLDPVYK
LASGGCDNTVKVWKLSDGSWKMDCSPALKKHTDWVRDVAWAPNLGLPKSTIASGSQDGRV
IIWTVGKEGEQWEGKVLKDFMTPVWRVSWSLTGNMLAVSDGNNNVTVWKEAVDGEWEQVT
VLEP
NT seq 915 nt   +upstreamnt  +downstreamnt
atgtcgggtcagaagattgaaacgggtcatgaggacatgatccacgacgtccaaatggat
tactacggtaagaaagttgcaactgcttcatctgactgcaccatcaagataaccggcgtc
accaacaacggtggaggatcccagcaccacctagccacattaaccggccaccgtggtcct
gtctggcaggtcgcatgggcccaccctaaattcggatcgatcctagcctcatgctcctat
gacggccaagtcatactctggaaagaaggcagccaaaaccaatggacacaagctcacgtc
ttcaccgaccacaaatcttctgtcaactccatcgcctgggctccttatgagctcggactg
tccctggcttgcgggtcgtccgatggtaacgtttcggttttcactgcccgtgctgatggt
ggctgggacacggcgaagatcgagcaagctcacccggttggtgtcacttctgtctcgtgg
gctccatctacttcccctggtgctcttgtcacttctagctcgctcgatccggtttataag
ctagcttctggtgggtgtgataatacagtgaaagtgtggaagctctctgacgggtcgtgg
aagatggattgctccccggctctgaagaagcacactgattgggtccgggatgtggcttgg
gcgcccaacttggggctccctaagtcgaccattgctagtggctcgcaagatgggagagtg
atcatatggacggtggggaaagaaggtgagcagtgggaaggtaaggttcttaaggacttt
atgactccggtttggcgggtgtcgtggtcgttgaccggtaacatgttggctgtgtctgat
gggaacaataacgtgactgtgtggaaagaggcggttgatggagagtgggaacaagtcacc
gttcttgagccgtag

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