Raphanus sativus (radish): 108849758
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Entry
108849758 CDS
T06014
Name
(RefSeq) uncharacterized protein LOC108849758
KO
K13254
spastin [EC:
5.6.1.1
]
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rsz04131
]
108849758
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
rsz04812
]
108849758
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.1 microtubule-severing ATPase
108849758
Membrane trafficking [BR:
rsz04131
]
Endoplasmic reticulum (ER) - Golgi transport
Others
Others
108849758
Cytoskeleton proteins [BR:
rsz04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
108849758
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
RuvB_N
Vps4_C
AAA_5
AAA_22
AAA_14
AAA_16
NPHP3_N
TIP49
Mg_chelatase
AAA_2
DUF815
RNA_helicase
nSTAND3
ABC_tran
IstB_IS21
AAA_25
AAA_24
NACHT
nSTAND6
Motif
Other DBs
NCBI-GeneID:
108849758
NCBI-ProteinID:
XP_018478862
UniProt:
A0A6J0N2H8
LinkDB
All DBs
Position
4:complement(42994426..42997178)
Genome browser
AA seq
494 aa
AA seq
DB search
MSFLRGIIESFSSIFTEETKHDPTGSTTSSDSMSSVVNGRGSSSVTNERVAYKLKGYFDL
AKEEIDKGVRSEEWGLHDDALLHYRNAQRIMNEATSTPSPSYISSSEKEKVRLYREKISK
WQSQVSGRLQALSKRTGVGVSENKRTVNSPSSASAPSIASNRRVSLQRRTSLPRGGTGTA
RSPRDAATANPKPVKESGSGYDDKLVEMINTTIVDRSPSVKWDDVAGLDGAKQALMEMVI
LPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEA
EKLVKTLFQVAISRQPSVIFMDEIDSIMSTRSVSENEASRRLKSEFLIQFDGVTSNPDDL
VIVIGATNKPQELDDAVLRRLVKRIYVPLPDSNVRKLLFKTKLKCQPHSLSGGDIDKIVS
ETEGYSGSDLQALCEEAAMMPIRELGADILTIQANKVRPLRYDDFRKSMAVIRPSLSKSK
WEELERWNSEFGSN
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgagtttcctcagaggcataatcgaatccttcagctcaatctttacggaagaaaccaaa
cacgatcccaccggatcaacaacctcttctgattccatgagcagcgtcgtcaatggaaga
ggtagttcttcggttactaacgaacgagtcgcgtataagctcaaaggatacttcgattta
gcgaaagaggagatcgacaaaggtgttagatcagaagagtggggtttgcacgacgacgcg
cttcttcactacagaaacgctcagaggatcatgaacgaagctacctctacgccttctcct
tcgtacatcagttccagtgagaaagagaaggtgagattgtatagagagaagatttctaaa
tggcagagtcaagtttctgggagattgcaagctctcagtaaacgtacaggtgttggagtg
tctgagaataagagaactgtaaactctccttcttcagcttctgctccctctattgcgtca
aacagaagagtctcattgcaaaggaggacttcactccccagaggtggtactggaacggcg
aggagccctagagatgctgctaccgcaaacccaaaacctgtgaaagaatctggaagtgga
tacgatgataagctagtagagatgataaacacaacgatagttgatagaagtccatctgtg
aagtgggatgatgtcgctggacttgatggagctaaacaagctttaatggagatggttatt
ttaccagcaaaacgaagagatttattcactggtctacggagaccagctagaggtttgctt
ctctttggtccacctggcaatggaaaaacaatgcttgccaaggcggtggcttctgagtct
caggcaacgttcttcaatgtctcagcatcttctttgacatcaaaatgggtgggtgaggct
gaaaagctagttaaaaccttgttccaagttgcaatatccagacaaccttctgtaattttt
atggatgaaatagatagtataatgtctacaaggtcggtcagtgagaatgaagcaagcaga
aggttgaaatcagagttccttatccagttcgatggtgtaacttctaatcctgatgatttg
gtgattgtcattggagctactaacaagccacaggagttggatgacgcggtgcttagaaga
ctggtgaagagaatatatgtaccgctaccggattcaaacgtgagaaaactacttttcaaa
actaaactcaagtgccaacctcactctttatccggtggcgacattgataaaatcgtcagt
gaaaccgaaggatactcaggaagcgatctacaagcattgtgtgaagaagctgcaatgatg
ccaatcagagaactcggtgcagatattctcaccatccaagcaaataaagtgagaccgcta
aggtatgatgattttaggaagtcaatggcagtgatcagaccaagcttgagtaaaagcaaa
tgggaagagcttgaacgttggaactctgagtttggctctaattga
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