Raphanus sativus (radish): 108849795
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Entry
108849795 CDS
T06014
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
108849795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsz03400
]
108849795
Enzymes [BR:
rsz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
108849795
DNA repair and recombination proteins [BR:
rsz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
108849795
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
SAP
Exo_endo_phos_2
PPP4R2
DUF7518
Motif
Other DBs
NCBI-GeneID:
108849795
NCBI-ProteinID:
XP_018478900
UniProt:
A0A6J0N2L7
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All DBs
Position
4:41663078..41665931
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AA seq
487 aa
AA seq
DB search
MNKVLQLGLQSSVVQAAKFLVVVPFRSSRIGSSIVSVRVGTTSLSNRLMSNATAKSVPLS
INNNKGKAMKGSDNDIEMMTVQELRATLRKLGLPVKGLKKELISTLRLHMDSNSPDESSG
AEKTETTSSTRSESVTIKRKTRNRKEANEDDSEAYGEKKAKQSTEEEEASLTISIQVIKT
DEVISSSNQSEPWTVLAHKKPEKDWKAYNPKTMRPPPLPEGTKSVKIMTWNVNGLRALLK
LESFSALQLAQREDFDVLCLQETKIQVKDVEEIKKALINGYDHSFWSCSVSKLGYSGTAI
ISRIKPLSVRYGTGLSESDHDMEGRIVTAEFDSFYLINTYVPNSGDGLKRLSYRIEEWDR
TLSNYIKELEKTKPVVLTGDLNCAHEEIDIFNPAGNKRSAGFTIEERQSFGENFLEKGFV
DTFRKQHPGVVGYTYWGYRSGARKTNRGWRLDYFLLSESIAANVHDSYILPDINGSDHCP
IGLILKL
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaggttctgcagttaggtctccagagctccgtcgtccaagccgccaagtttctg
gtggtggttccctttaggagctcaagaattggttcatcaatcgttagtgttagagtagga
acaacgagtctcagcaacagactgatgtcaaatgctacagctaagtccgtacctttatct
atcaacaacaacaagggaaaggcaatgaagggaagtgataatgacattgagatgatgact
gttcaagaacttagagccacactgaggaaacttggactacctgtgaagggactcaaaaaa
gaacttatctcaactttaaggcttcatatggacagcaattcaccagatgaaagttctggt
gcagagaaaacggagactacttcatccacccgctcagaaagtgtcactatcaaaagaaaa
acaagaaaccgaaaagaggctaatgaggatgactctgaagcttatggagagaagaaagct
aaacagtccactgaggaagaagaagcatcactaaccatttctatccaagtcattaaaacc
gatgaagtcatctcatcctcgaatcaaagtgaaccgtggacggtacttgctcacaagaag
cctgagaaagactggaaagcttataacccaaagacaatgagacctcctcctctaccagag
ggtaccaaatctgtgaagattatgacttggaacgttaatggcttgagagctctgttgaag
ttagagagcttctctgctcttcagcttgcccaaagagaagatttcgatgtgttgtgcttg
caggagactaaaatccaggtgaaggatgttgaggagatcaagaaagctcttattaatgga
tatgatcatagtttctggtcctgcagcgtctctaaacttggttactctggaactgctatc
atttcacggatcaaaccactgtcggttagatatggtactggtctatctgaatcagaccat
gacatggaaggacgcattgtgactgctgagttcgactcattctacttgataaacacttat
gttcctaactccggagatggcttgaaaagactgtcatacaggattgaagaatgggatcga
actctcagcaattatatcaaagagctggagaagactaaacctgtagtcttaactggtgat
ttaaactgtgctcatgaagagatcgacatcttcaatcccgcggggaataaaagaagtgct
ggtttcactatagaagaaagacaatcatttggagagaacttcttggagaagggatttgtg
gatacttttaggaagcagcatcctggtgttgtaggttatacttattggggttatcgcagt
ggtgcacgcaaaaccaacagaggatggagactggactacttcttgctatctgaatctatt
gcagccaatgtccatgattcttacattctccctgatatcaacggcagtgatcattgcccc
attggcctcattctcaagctctga
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