Raphanus sativus (radish): 108850452
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Entry
108850452 CDS
T06014
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Module
rsz_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108850452
Enzymes [BR:
rsz01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
108850452
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
108850452
NCBI-ProteinID:
XP_018479485
UniProt:
A0A6J0N4A4
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Position
4:17965384..17968173
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AA seq
405 aa
AA seq
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MKSSYHPQRMEIIVRVVFVLTLVNFGFVNGQIYDVLKFGAKGDGTTDNSKAFVEAWKAMC
SSGGNNKTLLIPSDNTFLLQPLVFQGPCNSPSVKVQLEGKIVAPLNKAAWSDLKSCEWVS
FNKIIGLTVFGSGTINGRGSSFWKANTPASKHPTQLHFQGCNNLEIYGITSFDSPRNHIS
INDCRQVKITQIKLIAPGDSPNTDGIDISASTDVEIYDTMVGTGDDCVALNSGSINISIT
RMQCGPGHGISVGSLGKDGEESIVENVQVTNCTFNETDNGARIKTWPNGKGYARNIVFKD
IILTETKNPIIIDQQYIDKGRIDVEESSAVAISNVTFVDFRGTSRQDEIIKIDCSEVTSC
KDIILDRIDITTIDGKKPIVECINAYGNSTNAYDGCLKPTHKPNL
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcatcgtatcatcctcagagaatggaaatcatagtacgtgttgtgttcgtgttg
acgttagtcaattttggatttgtaaatggtcaaatctatgatgtccttaaatttggtgct
aagggagatggtactaccgataattcaaaggcttttgtagaagcatggaaagctatgtgc
agtagtggtgggaataataaaacactccttattccttcagataatacctttttactacaa
cctctagtgtttcaaggtccttgtaactctccatctgtaaaagttcagttggaaggaaag
attgtcgcccctcttaacaaagcagcatggtcagatttgaagtcatgcgaatgggtcagt
tttaataaaatcatcggtctaacggtctttggttcaggaacaatcaatggacgtggttca
tctttctggaaggccaatacgccagcttctaaacacccgactcaattgcattttcaagga
tgcaataatcttgaaatatatggaataacctcattcgatagcccgagaaaccatatctca
atcaacgattgcagacaagtcaaaatcacccagataaaacttatagcgcctggtgatagt
cctaacaccgatggaattgatatttcagcatcaactgatgttgaaatatatgacactatg
gttggaacaggagatgattgtgtagctttgaacagtggaagtataaatatctccatcaca
aggatgcaatgtggtcctggacatggaataagtgtgggaagtttaggaaaagatggagaa
gaatctatagttgagaacgtccaagtgactaactgcactttcaatgagacggacaatgga
gcgagaattaagacatggccgaacggaaaaggatatgcaaggaatatagttttcaaggat
atcatactcactgaaaccaaaaatccaattataatcgatcaacagtatatagacaaggga
cgtatcgacgtagaggaatcatcagcagtggccattagcaacgtgacattcgtggatttt
cgtggaacgtcacgacaagatgagattataaagatagattgcagcgaagtcacatcttgc
aaagatatcattctagatagaattgatattactacgattgatggaaagaagccaatagtt
gaatgcattaacgcttatggaaattcaaccaatgcttatgatggttgtttgaagcccaca
cacaagcccaacttatga
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