Raphanus sativus (radish): 108851051
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Entry
108851051 CDS
T06014
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108851051
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rsz03041
]
108851051
03009 Ribosome biogenesis [BR:
rsz03009
]
108851051
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108851051
Spliceosome [BR:
rsz03041
]
Complex A
U2 snRNP components
U2 related factors
108851051
Complex B
108851051
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
108851051
Ribosome biogenesis [BR:
rsz03009
]
Eukaryotic type
90S particles
Helicases
108851051
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
AAA_19
AAA_22
HA2_N
nSTAND3
T2SSE
ATPase
AAA_16
AAA_7
AAA_29
PhoH
Myosin_head
FtsK_SpoIIIE
SRP54
TsaE
nSTAND1
AAA_30
ABC_tran
AAA_11
AAA_23
AAA_24
Motif
Other DBs
NCBI-GeneID:
108851051
NCBI-ProteinID:
XP_018479985
UniProt:
A0A6J0N5R4
LinkDB
All DBs
Position
4:complement(42245409..42247028)
Genome browser
AA seq
448 aa
AA seq
DB search
MESCIDMMVKKNSGARYCEEERRNLPVWVQKEEFVRTLKENQMVLVTGETGSGKTTQIPQ
FVLESVMDENSSASDQWLVGCTQPHRVAAMCAARRVAEEMDVKMGEEVGYTVRFEDCSSP
RTVLKYLTDVMLLREAMVDPLLLRYKVIILDEFHDRSLATDLLVAILNRTLFRRPDLKLV
VMSATLERLKQKYFSDADAPLIKVPCGRLLHPVEILYTREPVMDYLETAISKVIEIHMCE
PTGDVLVFLTGEEEIEHACSRIVSSLGDQVTVVPLYSSLPPALQQKIFDPTPPPHSVRKI
IVSTNVAETSLSMDGIAYVVDPGFSKQKNCCFFTANEIWSVSRISKASAYQRAGRAGRKC
FRLYTEKTFNDLPAWELPEIFRSNLVKTVLTLMRLGVREVTDFEFIDFPSPQMLYRGLED
LFHLGAIDDQGNLTNIGHMMETSLEEPL
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atggagtcgtgcatcgatatgatggtgaagaagaattcaggtgctaggtattgcgaagaa
gaacgtaggaatctaccagtctgggtgcaaaaagaagagtttgtccgaactttgaaggag
aatcagatggtgttggtgacgggtgagaccggtagtggtaaaacaacgcagatcccacag
tttgttttagaatcagtgatggatgaaaactctagcgcttctgatcagtggttggttggg
tgcacgcagcctcatcgagttgcagccatgtgcgctgcacgtcgtgtggctgaagagatg
gatgtaaagatgggggaagaggtcggttacacagtccgtttcgaggattgcagtagcccc
cgaacggtgctcaagtacctgactgatgtaatgcttctcagggaagctatggtggatccg
ctccttttgagatacaaagtgattatccttgacgaatttcatgatagaagtttagccaca
gatttacttgttgctattcttaaccgcaccttgtttaggcgacctgatcttaagcttgtt
gtgatgagtgcaaccctagagcgtttgaagcaaaagtattttagtgatgcagatgcgcct
ctcatcaaagtcccttgtggtaggctcctccatccagtggagatcttgtacacccgagaa
cctgtgatggactatctcgagactgccataagcaaagttatcgagattcacatgtgtgaa
ccaacaggtgacgttcttgttttcttgaccggggaagaagagattgaacatgcttgcagc
agaattgtcagtagtcttggagatcaagtcaccgttgtgcccttgtattcctctcttcca
ccagctttgcaacaaaagatcttcgatcctacaccaccaccacattcagtgagaaagatc
atcgtctccaccaacgttgctgagacttctttgtctatggacgggattgcttatgtggtt
gatcctggtttctccaagcaaaagaactgttgtttcttcactgctaacgagatctggtcg
gtgtcccgaatatcaaaagcaagtgcttaccagagagcaggacgtgccggtaggaaatgt
tttaggctctacactgagaagactttcaatgacttaccggcttgggagcttcctgagata
tttagatcaaaccttgttaaaacagttttgactttgatgaggctaggggtgagggaagtg
acagattttgaatttatagattttccttcccctcaaatgctctatcggggcttggaggat
ttgtttcatctaggagcaatagatgaccaaggtaacctgacaaatataggccacatgatg
gagacgagtttggaagagccactttga
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