Raphanus sativus (radish): 108851299
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Entry
108851299 CDS
T06014
Name
(RefSeq) uncharacterized protein LOC108851299
KO
K14311
nuclear pore complex protein Nup188
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108851299
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108851299
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108851299
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cdc13_OB2
Motif
Other DBs
NCBI-GeneID:
108851299
NCBI-ProteinID:
XP_018480209
UniProt:
A0A6J0N6W5
LinkDB
All DBs
Position
4:367777..378019
Genome browser
AA seq
1960 aa
AA seq
DB search
MANPKSVDPSLWWESFGSLLSELENASLSDELPQPIAEKLEENRAWFVNTVTMFKPASGK
SKDALDSDVVKIKEHHRLVIKPDLKEKALRISSYLNLDEIQSYILVERSMEQDFGTIDSP
PQDFVDLILLQYYFERQCLLKCTKRILTDAIYTAKEESTIRNEAVKLISDGLERQQSSLL
ESLFSSSFPQQMDVNLFNVWAEATLVEDSLVLDILFLLYHESFHTCNGDRWRTLCSLYKG
ILLGSYSFRKLAVSAEAQHSACRVKIQLLMILIDTLDMENLLQMVHDGVPFRSGACVFSI
IDVQEMDATISSLNTLEVKEAGPLVLAWAVFLCLISSLPGKEESPFLMEIDHVSYVHQAF
EASSLSYFLEVLQSNVLDDFDGPISGFRSVLRTFVSAFIASYEINIQLEDANLELILDIL
CKVYQGEESLCTQFWDRKSYVDGPIRYLLFDLEREFPFRSVEFIRLLASLSEGSWPAECV
YNFLDKSVGISTLFDITSDSRVDDASQLVETSRPLQIPGLEGLVIPSNTRGRILRLINEN
TGLVRWEYSLSGATVLIIHLANVLYTGNNREAFVILELLRRLVTFNRAVCFSLLNISHFF
HENGSYMDEKLESDVRVVDIICNSVRTLTFDSSGAALMAMAIDILAKLLRCSPSNVAPMV
LKENIFDMTSGSGVPECGYNISLSGSWSLSGKLAKMILIDCEKNDTSCPLVISVLEFTMR
LVEGGVENDVVLALIVFSLQYVLVSHESWKYNHGNMRWNVTLKVIEVMKTCLRFSKFSTK
LKDVILDILLNDASVHNALFRIICTTTQTLENLCASRFIEPAEFEGWQLSIVSVLDVLDI
TLSQSSQSTNSGLPVFHQTLLSSTVKPIPVVAAITSLISYFRNPTIQVGAAKVLSKLFAM
AESSQLCIISKSGFGLDDKQITDLRTTVSQIILDLSEPNEDLVIATMKLLTVVARYQPAL
LVALFDSSEDSDAGKLKQSDKENSAGPESACKSRLSHIILQHVERATDFVNRYTDILLSL
LGFLKTLWQEAGQYANLLEPFKASKRLWQEFSNIISQVSKLKDSSVGRLGKEEISKLYVK
YQCQSSVLEILACNMFLNKKLLFAESLKKSWFEQKEKAINAASPSKLSLTAASDPKDIFS
KWCDVSVLDGLIESVSSLEGEIEINVQSKVAAVLLIVHLIVKLETSGAGALSMSLVGKIK
VISEMLCVQPAFSLLLAQYSKLGYSGGKELMPMILSDLYCHLEGKLGGRDIPSGPFKELF
QFLVESGFWEKYKQSADMDKHTALGDSILFDIQHIRTELGTAIWDFSEWKTSKAMTEEML
SYMQRANSMVLISTSQVSALHALISVLILYEDNSLEDSVTVERKVPARVTLSSIDEVCKK
FSTRVDSLASLWDAPKIVFDILTAQVDLLSRLLKSAKKNLPLSVCALVLRNVGPGLKILG
SLKHSNGILKKTVNLLLEVLLLVVGFGSDSPNSSEIGNMSSRDLAEISDATIGLLPLLCN
FMGNPEYLTLCLTTVDLILRNFLTPETWFPIIQSHLRLQHVILQLQDKKSSASVSAIMKF
FLTIAQVHDGAQMLLNSGFFSTLRALFIDLPDGISTLVSDNEKGGLLDKKENTQHIWGIG
LAVVTAMVNSLGSVSVGADIVESVISYFFSEKGYMISYYLSAPDFPSDDREKVRARTQPT
WTSLAYLRETEHTLLMMCALASHWRSWVKIMKEMDSPLREMTIHLLAFISRGAQRLRESN
ITTSHLLCPPVVKEEFDSCKRQSVINSKHGWFALAPLVCVGKPKLGAVSISTALVVRGQT
TEQPGSVPQSHFTDSVAIQIYRVASLLLNFLCLQAEGVVKRAEEVGYLDLAHFPELPEPE
ILHGLQDQAIAIVAELCDNYREVPNEVKELCLLLLQITEKSLYLELCVVQVCRIHQVFGR
VDNFSKDFKKLVKAAEVHSYLKTSVDSLKKVAVFLYPGLL
NT seq
5883 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaccctaaatccgtcgatccgtccctatggtgggaatcgtttggatctcttctg
agcgagctcgagaatgcatctctctctgatgaactcccacagcccatcgcggagaagttg
gaggaaaaccgcgcgtggtttgttaacacagtgacgatgttcaaaccagcgagtgggaaa
tcaaaagatgctttggattcggatgtagtcaagattaaggagcatcatcgcttggtgatt
aagcccgacctcaaagaaaaagcccttcgaatcagctcttatctgaatctagatgaaatc
caatcgtacatccttgtggaaagatccatggaacaggactttggaactattgactcgcca
cctcaagatttcgttgacctgatattgcttcagtattactttgagcgccagtgcctactc
aagtgtacaaagcgtattctcaccgatgctatatatacagcaaaagaggaaagtactatt
aggaacgaagctgtaaagcttatctcggatggccttgaaagacaacaatcatcacttctc
gagagccttttctcctcttcttttccccagcagatggatgtcaatctatttaatgtgtgg
gcggaggcgaccctagttgaggacagtttggtgttggatattcttttccttctttatcat
gaatcctttcacacttgtaatggagacagatggagaacactgtgttccttatacaaggga
attcttttgggctcctatagctttaggaagctggctgtgtcagctgaagcacagcattct
gcatgccgtgtaaaaattcagttgttgatgatccttatcgacacgctggatatggagaat
ttgttacaaatggttcatgacggagtccctttcaggtctggcgcttgtgttttttccatt
attgatgtccaagagatggatgcaacaatctctagcctcaacactctcgaagtaaaagaa
gcaggacccctagtccttgcatgggcagtatttctgtgtcttatttcatcacttcctggg
aaggaggaaagtcctttcctgatggagatagatcacgtgagctatgttcatcaagctttt
gaggcatcatcattgagctattttcttgaagttcttcaaagtaatgtgttagatgatttc
gatggaccaatttctggttttcgtagtgtcttgaggacttttgtttcagcatttattgcg
tcttatgagatcaatattcagctggaagatgccaatctggagttgatactggacatcctt
tgcaaggtttatcaaggagaggagtccctttgtactcagttttgggatcgaaaaagttat
gttgatggccctattcggtatcttctctttgatttggagagggaatttcctttcagaagt
gttgaattcattcgtctcttggcgtccttgagtgaaggaagttggcccgctgaatgtgta
tacaactttctggataaatcagtcgggatatcaactttatttgatattactagtgactct
cgagtagatgatgcttcccagctagttgaaacttcccggccgttgcaaattccaggtctt
gaaggtttagttattccgagcaatactcgtgggcgaattctgagattaatcaatgaaaac
actggccttgtgcggtgggagtattcactctccggcgctacagtattgatcatccatctg
gccaatgtactctacactggtaacaatcgtgaagcttttgtgattctagagctgcttcgt
cgattggtaacatttaacagggccgtatgtttctccttactgaatatcagtcactttttt
catgaaaatggatcgtacatggatgagaagctggaaagtgatgtgagagtggttgatata
atttgcaattcagtcagaaccttgacttttgactctagcggtgcagctctgatggcaatg
gctattgatatcttagctaagctgttgcgatgttccccatcaaatgttgctcccatggtt
ctaaaggaaaatatatttgacatgacttcagggtcaggcgtcccagaatgtggatacaat
atttctttgagtggatcctggtcgctctccgggaaactggcaaaaatgatcttgattgat
tgcgagaagaatgatacaagctgtccattagttatatcagttctggaattcaccatgcgg
cttgtggaaggaggagtggagaatgatgtagtacttgctttaattgttttctcgttgcag
tatgttcttgttagtcatgagagttggaaatacaatcatggaaatatgcgttggaatgtg
acactgaaggtcattgaagtgatgaaaacgtgtctcagattcagtaaattctccaccaag
ctgaaggatgttatccttgatatcttgttgaacgatgcctctgttcacaatgctctcttc
cgaatcatttgtaccactacacaaactttagagaacctttgtgcaagccgttttattgaa
ccagcagagtttgaaggatggcaactttcaatagtttctgttttggatgttttagacatc
acgctctcccaatcttctcagagtacaaattctggtcttcccgtgtttcatcaaactttg
ctgtcgtctacagttaaaccaatcccagttgtggcagctatcacatcgttgatatcttac
ttccggaatcctactatccaggttggtgctgccaaagtactttcaaagttatttgccatg
gcagaatcatcacaactctgtataataagcaaatcaggctttggtctagacgataaacag
atcacagatttaagaactacggttagccagatcatacttgatctatcggaaccaaatgaa
gatctagtcattgccacgatgaaactactaactgttgtggcaagatatcagcctgctctt
ttagttgccctatttgattcaagtgaagactcagatgctggcaagttaaaacagtcagac
aaagagaattccgcaggtcctgaatcggcttgtaaatctcgattatcgcacattatcctg
cagcatgttgagagagcaactgattttgtcaatagatacacagatatattactgagttta
cttggttttcttaaaaccctttggcaagaggctggccaatacgcgaatttgttggaacca
tttaaggcgtcaaaaaggttgtggcaggaattttccaacattatatcccaggtgtctaag
ctaaaggattcgtcagttggaagattaggcaaagaagaaatctctaagttgtatgtgaaa
tatcagtgtcagtcctctgttttggaaattctggcgtgcaacatgtttttgaacaagaaa
ttgttgtttgccgagtcacttaaaaaatcatggttcgagcagaaagagaaggcaattaac
gctgcctcaccatccaaattatctctgactgcggcttcagatcccaaggatatcttttca
aaatggtgtgatgtatctgttttagatggccttatcgaatcagtttcatctttagaaggt
gaaattgaaataaacgtacaatcaaaggttgccgccgttttacttattgtgcatttgatt
gtgaaactggaaacatctggcgcaggagcattgtctatgtctttagttgggaagataaaa
gtcatttcagaaatgctttgtgtccaacctgctttttctttgttgttggcacaatattca
aagcttggttatagtggagggaaggagctaatgcctatgattctcagcgacttgtactgt
catttggaagggaaacttgggggtcgtgatatcccttctggtccattcaaagagcttttc
cagtttctagttgagtcaggattttgggagaaatacaaacagagtgctgatatggacaaa
catacggctttgggggacagtattttgtttgacattcagcacatacgaacagaattaggt
actgctatttgggatttttccgagtggaagacttctaaagcaatgacagaggaaatgctg
agttacatgcagagagcaaactcgatggttttaatctcaacttcgcaggtctctgctttg
catgcattgatatccgtcttgattctttacgaggacaattctcttgaagacagtgtgact
gtagaaaggaaagtccctgctcgggtcactctttcaagcattgatgaagtgtgcaaaaag
ttctccaccagggttgattcacttgcctctctctgggatgcccccaagattgtgttcgat
atactaacagcacaggtagacttgctatcgcggcttttgaaatccgcaaagaaaaatctg
ccattatctgtttgtgcacttgtcctgagaaatgttgggcccggcctcaaaatcctcggt
agtttgaagcattcaaatggtatattaaagaagacggtaaacctcctgcttgaggtgctg
cttctggttgtgggttttggttcagacagcccaaattcaagtgagataggaaatatgtca
tccagagatcttgcagaaatatctgatgcgacaattggattattaccccttctctgcaac
ttcatggggaatcccgagtacttgactctctgcctgaccacggtagacttgattctcaga
aactttttgacgccagagacatggttcccaattatacagagtcatctccgtttgcagcat
gttatactgcagcttcaggataagaaatcctcggcatccgtttcagcaataatgaagttt
ttcttaactattgctcaagttcatgacggtgctcagatgcttctaaattccggatttttc
tcgactctaagagctttgttcattgacttgccagatggaatatctactttggtttctgac
aacgaaaagggagggctgctagataagaaagaaaatacgcaacatatctggggaatcggt
ttggctgtggttacggcgatggttaattctctaggatccgtttctgtgggtgcggatatc
gtggagagtgtaatatcttactttttctcagagaaaggttacatgatctcttattacctg
tctgcgccggatttcccttctgatgatcgtgaaaaagtgagagcaagaactcaaccgaca
tggacatcccttgcttatctgagagaaaccgagcatactctcctgatgatgtgtgcatta
gcaagccactggagatcatgggttaaaattatgaaggagatggattctccactaagagaa
atgactatacatctcttggcctttatcagcagaggtgctcagcgcctcagagagtctaat
atcacaacatctcatctgttatgccctccagtagtgaaagaagagtttgattcctgcaaa
agacagtcggtaatcaacagtaaacacggatggtttgctctagcaccgttagtttgtgtc
gggaaacccaagctcggtgctgtatcaatctcaactgctctagttgtcaggggccaaacg
acagagcaacctggatctgttcctcagtcacacttcacagactcggttgcgatacagatt
tatagagtggcctctctcttgttgaattttctatgtttacaagcagaaggtgttgttaaa
cgggcagaggaagtaggatatttagatcttgctcatttccctgagcttccagagccggaa
attttgcacggtctacaggaccaagccatagcgattgtcgctgagctttgtgataattac
agagaggttcctaatgaagtcaaggagctgtgtctcttgttgctccaaataacagagaag
tcgttatatttggaactctgtgtagttcaggtttgcaggatccatcaagtctttggccgt
gtggataacttctcaaaagacttcaaaaagctagtgaaagctgcagaagtgcattcgtac
ttgaaaacgtctgtggattcactgaagaaagtagctgtgtttctgtatcctggattgcta
tag
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