Raphanus sativus (radish): 108851738
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Entry
108851738 CDS
T06014
Name
(RefSeq) putative pectate lyase 11
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108851738
Enzymes [BR:
rsz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108851738
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
108851738
NCBI-ProteinID:
XP_056864628
UniProt:
A0A9W3DLS5
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Position
4:complement(13203971..13207447)
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AA seq
412 aa
AA seq
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MVWYSTNPFVYTFICLLSLGNTIAFSSSSLLHTQDPNLVVDEVNRSVFNASRRSLAYLSC
RTGNPIDDCWRCDPNWEINRQRLADCAIGFGKNAIGGRDGRIYVVIDAANDDPVNPRPGT
LRHAVTQEEPLWIIFKRDMVIRLKKELIITSFKTIDGRGSSVHITGGPCIKIHYATNIII
HGVNIHDCKPGSGGMIRDGPRHTGWWIPSDGDAVAIFGGKHVWIDHCSLSNCNDGLIDAI
HGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFH
VVNNDYTHWEMYAIGGSASPTIFSQGNRFLAPNTRFNKEVTKHEDAPESEWRGWNWRSEG
DMLLNGAYFRQSGAGASSTYARASSLSARPSSLVGSITTTAGTLSCRRGRRC
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atggtttggtattctactaatccttttgtttacacttttatatgtctcctatcactcggc
aacacgattgcattctcttcaagttcgttgctgcatactcaagatcctaatctagtagtt
gacgaggttaatagaagtgtattcaatgcgtcaaggaggagcctggcctatctatcctgt
agaaccggtaatcctattgatgactgttggcgttgcgatccaaattgggagataaaccgc
caacggctagccgattgtgctatagggtttggtaaaaacgctatcggaggccgcgatggc
cgaatttacgtggtcatagatgcggccaacgatgatccagtaaaccccagaccgggaaca
ctaagacatgcggtaacgcaagaagagccattatggatcattttcaagagagatatggtc
attaggctcaagaaagaacttatcatcacatctttcaagacaattgatggtagaggctca
agtgttcacataaccggtggaccttgcattaaaatccactatgcaactaacatcatcata
catggcgttaacattcatgactgcaaaccaggatcaggtggcatgataagagatggccca
cgtcacaccgggtggtggatcccgtcagatggagatgcagtggcgatatttggagggaaa
catgtgtggatcgaccattgctctttgtcgaactgcaatgatggtctcatagacgccatt
catggttcgacggctataaccatatcgaacaactacatgacgcaccatgacaaggtcatg
cttttaggacacagcgatagctatacacaggacaaaaacatgcaagtcaccattgcgttt
aaccatttcggagaagggctcgttcaaaggatgccacgatgcaggcatggatatttccat
gtggtgaacaatgattatacacactgggaaatgtatgccatcggtggaagtgcttctcca
acgatattcagtcaaggcaatagatttctcgctcctaacacccgatttaataaagaggtt
acaaaacatgaagatgcacccgaaagcgaatggagaggttggaactggagatcggaaggg
gatatgttgttaaacggagcatatttccggcagtcaggtgccggagcttcatcgacatat
gcaagagcttcgagcctaagtgctaggccatcatcgcttgtgggttccatcacgacgaca
gcaggaacactaagttgtcggcgcggtcgtcgctgttga
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