Raphanus sativus (radish): 108852613
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Entry
108852613 CDS
T06014
Name
(RefSeq) chaperonin CPN60-like 1, mitochondrial isoform X1
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108852613
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108852613
03110 Chaperones and folding catalysts [BR:
rsz03110
]
108852613
03029 Mitochondrial biogenesis [BR:
rsz03029
]
108852613
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rsz04147
]
108852613
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
108852613
Messenger RNA biogenesis [BR:
rsz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
108852613
Chaperones and folding catalysts [BR:
rsz03110
]
Heat shock proteins
HSP60 / Chaperonin
108852613
Mitochondrial biogenesis [BR:
rsz03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
108852613
Exosome [BR:
rsz04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108852613
Exosomal proteins of other body fluids (saliva and urine)
108852613
Exosomal proteins of breast cancer cells
108852613
Exosomal proteins of colorectal cancer cells
108852613
Exosomal proteins of bladder cancer cells
108852613
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
F_actin_bund_C
Motif
Other DBs
NCBI-GeneID:
108852613
NCBI-ProteinID:
XP_056864667
UniProt:
A0A9W3DLN1
LinkDB
All DBs
Position
4:complement(38270468..38276603)
Genome browser
AA seq
623 aa
AA seq
DB search
MYRLVSNIASKSRNARKCTTQIGSRLSSTRSYSAKDKRSGVNKELSDTGQVTMGPKQCRA
KGCNVTIEQSSEGNITITHSWRRRAPKVTKDDVTVAKSIESKDRVDKKVFASPVKPVSKA
TNNVAVYGTTYATVLTRAILTEACKSIASWTNERELTRGIKLAVGTVLKNLKCRARMIRT
FEEIAQVGTTSANGDKEIGELIAKAIESVGKEGVITVQAGNTWSNELEVVEGMKIDRGYR
SPLFITNKKNQTCELEDPLILIHEKEITSPDPMSKVTGPDSISTVLELALQKLEYPLRHY
FNKAKVTKFEYMTKVLDLALKKKRSLLIIAEDLDSFSVGGLIWKTPRSRDVTRQGLSWET
PSGEMKLCAVKAPGFGENRRAYMHDLATLTGAQVITEDRGMSLEKIELSMLGNCKKVIVS
KDSTVFIGGAGDKKHIGERCEQIRSMVEASESDYDKGMLQDRLDKLSGRVAVIKIGGSSE
REVKIDRVTDALNATKAALEEGIVPGGGVALLYASKELEKLSTDDDSDQNLGVQIIQNAL
KTPVYTIASNAGVDGEAIVNELLESDNPDLGYDAVKGEYVDMVKSGIIDPVKMIRTALVD
AARNADVSSLCRQRWKQLGLRFY
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgtatcgtcttgtctccaacattgcttcaaaatctagaaatgccagaaagtgtacaacc
cagattggaagcaggctcagttccactaggagttattcagcaaaagacaaaaggtccggt
gttaacaaggagctttctgatacaggtcaagtcactatgggacccaagcagtgccgtgcg
aaggggtgtaatgtcaccatcgaacaaagctctgagggtaatatcaccatcacacatagc
tggcgacggcgtgcaccaaaggtgacaaaagatgatgttactgttgccaagagcattgag
tccaaggacagagtagacaagaaggtttttgccagtcctgtcaaaccggtttccaaagcc
acaaataatgtagctgtttatggaacaacgtatgctacagtccttactcgagctatcctc
acggaagcttgtaaatcaattgcttcttggacgaatgaaagggaactaacacgtggtatc
aagttagcagttggtaccgttttgaagaacttaaagtgtagggcacgcatgattcgcact
tttgaagaaattgcccaagttggaacgacatcagctaatggagataaagagattggtgaa
ctaattgcaaaggctattgaaagtgttggcaaagagggagtgatcactgttcaagctggc
aacacctggtctaacgagttggaagttgtggagggtatgaagattgacaggggatacaga
tccccactcttcattacaaacaagaaaaaccaaacatgtgagctagaagatcctctcatt
ctcatccacgagaaggaaattactagtcctgatcctatgtctaaagttaccggtcctgat
tctatctctacagtcttagagttggctctccagaagctggaatatcctctccgtcactat
ttcaacaaggcgaaagttaccaaatttgaatatatgactaaagtcttagacttggccctc
aagaaaaaaaggtcgttactgatcattgcggaggatttggacagtttttctgttggtggg
ctgatttggaaaacgcctcgttctcgcgatgttactaggcaagggctaagttgggaaact
cctagtggtgaaatgaagctctgtgctgtgaaggcccctggttttggagaaaaccgtagg
gcttatatgcacgatctagctaccctcacaggagcccaggtaataacagaagacagaggt
atgagtcttgagaaaattgaactcagtatgcttggaaactgcaaaaaggtaattgtatcc
aaagacagcactgtttttattggtggggctggtgacaagaaacatattggagaacgatgt
gaacagatacgatccatggttgaagcgagcgagtctgactatgacaagggtatgttacaa
gacaggttggataagctttctggtagagttgctgtaataaagattggaggatcgagtgag
agagaagtaaagatagatagagtaaccgatgctctaaatgccaccaaagcagctttagaa
gaaggtattgttccaggcggtggtgttgctcttctgtacgcgtcaaaagaacttgagaag
ctttccacagatgatgattctgatcagaaccttggtgtccaaatcatccaaaacgctctc
aagacacctgtttacactattgcttccaacgctggagtcgacggtgaagccatcgtaaac
gagcttttggaatcagataatcctgacctaggttatgatgctgttaaaggagaatacgtc
gatatggtgaaatctggtattatcgaccctgtgaaaatgatcagaactgcattggttgat
gctgcaaggaacgcagatgtgtctagtctttgtcgacaacgatggaagcagctgggactg
agattctactaa
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