Raphanus sativus (radish): 108852983
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Entry
108852983 CDS
T06014
Name
(RefSeq) putative pectate lyase 14
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108852983
Enzymes [BR:
rsz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108852983
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
DUF1411
Motif
Other DBs
NCBI-GeneID:
108852983
NCBI-ProteinID:
XP_018481953
UniProt:
A0A6J0NDL6
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Position
4:44067102..44074139
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AA seq
434 aa
AA seq
DB search
MAVARTLSSVSPTLIIILTLFLHVNAVQVRKELKPDPNSRNTSMADYEWHEHAVKDPEEI
AAMVDMKIRNSTERRRLGYFSCSTGNPIDDCWRCDKKWHRQRKRLANCAIGFGHNAVGGR
DGRFYVVTDPSDHDPVKPKPGTLRYAVIQDRPLWIVFKRDMVITLSQELIMNSFKTIDGR
GVNVHIAGGACITIQYVTNIIIHGINIHDCKRTGNAMVRSSETHYGWRTMADGDGISIFG
SSHIWIDHNSLSNCADGLIDAIMGSTAITISNNYLTHHNEAILLGHTDSYTRDKMMQVTI
AYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPGNRFAK
EVTKRVGAGKGEWNQWNWRSQGDLLLNGAYFTSSGAGASSSYARASSLAAKSSSLVGMLT
YSSGALKCRIGTPC
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atggcggtcgctagaacattgtcttcagtctcaccaactctgatcataattcttacactc
tttctccatgtaaatgcagttcaagtaagaaaggagttgaaacctgatccgaactcaaga
aatacatcaatggcggattatgaatggcatgaacacgccgttaaagacccagaagaaata
gcagccatggtcgatatgaagatacgaaacagtacagaacgtaggaggttaggttacttc
tcctgctcaaccggaaacccaatcgacgattgttggcgttgcgataaaaaatggcatcgc
cagagaaagcgtctagcaaattgcgccatcggatttggacataacgccgtcggaggcaga
gacggacgtttctacgttgttactgatccctccgatcacgatccggtgaaacctaaaccc
ggtacgctccggtacgctgtgatacaagaccgaccactatggatcgtcttcaagcgcgac
atggtcatcactctaagtcaagagctcatcatgaatagcttcaaaacgatcgatggtcgt
ggcgtgaacgtgcacatcgctggtggagcatgtattacgattcagtacgtgacgaacatc
atcattcacgggattaacattcatgattgtaagcgtactggtaatgccatggttagaagc
tcggagacacattatggttggagaacgatggctgatggtgatggtatctcgatttttggg
tcgagccatatctggatcgatcataattctctgtcgaattgtgctgatggtttgatcgat
gcgattatgggatctactgctataaccatttcgaataactatcttactcaccacaacgag
gctattttgttggggcataccgattcctacaccagagacaaaatgatgcaagtgacgatt
gcatataatcattttggggagggtcttatacagagaatgcccaggtgcaggcatggatac
ttccatgtggtaaacaacgattacactcactgggaaatgtatgcaatcggtggaagtgca
aaccctaccataaacagtcaaggaaatcgattcctagccccaggaaaccgttttgctaag
gaggtgacaaagagagtaggtgcagggaaaggagaatggaaccagtggaactggagatca
caaggagacctattgctcaatggtgcttacttcacttcatctggagctggagcttcttca
agctacgctagagcctctagtttggctgctaaatcatcttcccttgtaggcatgcttacc
tatagctctggtgccctgaaatgcaggatcggcacgccttgttaa
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