Raphanus sativus (radish): 108853401
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Entry
108853401 CDS
T06014
Name
(RefSeq) exopolygalacturonase
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Module
rsz_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108853401
Enzymes [BR:
rsz01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
108853401
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Motif
Other DBs
NCBI-GeneID:
108853401
NCBI-ProteinID:
XP_018482318
UniProt:
A0A6J0NEQ6
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Position
4:38225738..38227238
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AA seq
407 aa
AA seq
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MASRFLILCFSPLFFFFFLAVAGAQTNAFHGEEKVFDVRNYGARGHLERNNTLAFTEAWS
KACQWTGGRSKVYIPAGEFYLDQIAFYGPCKSHITFTIKGTLFAPRTLYADKKAEWISFR
YVDNLTVNGGGTLDGRGSYSWPLNDCNKNVNCRAMAMNIGFAFVRSSRVNGLKSLNSKMG
HFNLFAVEDFDITGVVITAPEDSPNTDGIKIGRSKNMHISNVTIGTGDDCIAILDGTTNL
DISNARCGPGHGISVGSIGRYKDEKNIEGITVRNSVFKGTMNGIRIKTWAKSVSQTSVSK
FLFENIQMIDAGNPIVIDQRYCPHNQCDSSGDYHSHVQIKDVKYNNIWGTSKTRAALMMQ
CSKTFPCQGVELSDIDLVYKGNGPATATCENVGGSVHGKIVPGDCRM
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctaggtttctgatcctgtgtttctcgcctctctttttcttcttcttccttgct
gtcgcaggtgctcagactaatgcatttcacggtgaagaaaaggtcttcgacgtaagaaac
tacggtgctcgtggccacctcgaaagaaacaatactcttgcgtttacagaagcgtggagc
aaagcttgtcaatggactggtggaagatcaaaggtctatattcccgccggagaattctat
ctcgatcaaatagcgttctacggtccttgcaaaagtcatattacttttacaatcaaagga
acgttgttcgctcctcggaccctttacgccgacaaaaaagcagaatggatctctttccgg
tacgtcgataacctcaccgtcaacggaggtggaacacttgacggtcgaggatcttactcc
tggcctctcaatgattgtaacaaaaacgtcaactgtcgtgctatggctatgaacattggg
tttgctttcgttagatcctcgagggttaacggtctaaaatcgctcaacagcaaaatggga
cacttcaacttattcgcagtcgaggattttgacattaccggcgtcgtcatcaccgctccc
gaagacagccctaacaccgacggaatcaagatcgggagatctaagaatatgcatatttcc
aacgtcactatcggaaccggtgacgattgtatcgcaattcttgacggtaccaccaacttg
gatatctctaatgccaggtgcggaccagggcacgggattagtgtcgggagcattgggaga
tacaaagatgagaagaatattgagggcataaccgtaagaaactctgtattcaaaggtaca
atgaacggtataaggatcaaaacatgggctaagtcggtctcgcagacttcggtttcgaaa
ttcttgttcgagaatatccaaatgatcgatgctggaaaccccatcgtcatcgaccagcgg
tattgtccacacaatcaatgcgacagttctggagactatcattctcatgttcagatcaaa
gacgtgaagtataacaacatttggggaacgtcgaagactcgagcggctttgatgatgcag
tgtagtaaaacgtttccttgtcaaggcgttgagctctcagacatcgacttggtgtacaaa
ggaaacgggcctgccacggctacgtgtgagaacgttggtggttcagttcatgggaagatc
gtgcctggtgattgccggatgtga
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