Raphanus sativus (radish): 108853595
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Entry
108853595 CDS
T06014
Name
(RefSeq) ATP-dependent helicase BRM-like isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108853595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsz03021
]
108853595
03036 Chromosome and associated proteins [BR:
rsz03036
]
108853595
Transcription machinery [BR:
rsz03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108853595
Chromosome and associated proteins [BR:
rsz03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
108853595
Chromatin remodeling factors
BAF complex
108853595
PBAF complex
108853595
GBAF(ncBAF) complex
108853595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
QLQ
DEAD
HDA2-3
AAA_14
Viral_Hsp90
Bromodomain
Motif
Other DBs
NCBI-GeneID:
108853595
NCBI-ProteinID:
XP_018482502
UniProt:
A0A6J0NF78
LinkDB
All DBs
Position
4:43221527..43230519
Genome browser
AA seq
2145 aa
AA seq
DB search
MQSGGSGGGPTRGMGPAGRTNSTSSAASPTSSSSSVQQQQLASRQQQQQQGRNSEANDGM
FAYHPGGVQGMMGGVNFGSSSASLQQPRRLFDSSQQQQQGSSQEGQQNFNPMQQAYLQFA
LQAQQQKAQQQARMGMLGSSKDQDARMGMLNMQGTMQASNQPQASSSSNPSAEQFTRQME
SGPQQRNEAKPHPQQVGTGQLMPGNISRPMQAPQGVNNMGTNQLALSQQWQAMQAWARER
NIDLSHPANANQMTHILQARMAAQQKANEGNAASQSPSIPVSSQPSSGVPGDNSPRPNSA
GDTSGQSGSGKARHAISTSSLASTSSPRMMNPAANPFSAQGRDNPMYPRHLVQSTNGMPS
GNSMQTSVNETHVLDHNASTNKSLGSAEHLQMQQPRQLNAPSPKAALSGAGLLSKSSLQS
GQGTKQAQQRSGFTKQQLHVLKAQILAFRRLKKGEGSLPQELFKSIAPPPLEVQTPLQIF
PVRVHVQDKSSDKTVENQARSLESGKESQTAASSNGQIFAKEEDNGGDTEVPLATGQSQL
FQNLGKEAASTDAVTKEEQQTDAFPVKSDQGADASTQQTPKSDSNTDKGKAVASDGGQSN
VPPQTNSPQQPKDTASARKYHGPLFDFPFFTRKHDAMGSATANANNNLTLAYDIKDLICE
EGAEFFNKKRTDSLKKINGLLATNLERKRIRPDLVLRLQIEEKKLRLSALQSRVRDEVDR
QQQDIMSMPDRPYRKFVRLCERQRLEMNRQVLANQKAVREKQLKTIFQWRKKLLEAHWSI
RDARTARNRGVAKYHEKMLREFSKRPDDGRNKRMEALKNNDVERYREMLLEQQTNIPGDA
AERYNVLSSFLTQTEDYLHKLGGKITATKNQQEVEEAANAAAIAARLQGLSEEEVRAAAA
CAREEVLIRNRFVEMNAPKDNSSVNKYYTLAHAVNEVVVRQPSMLQAGTLRDYQLVGLQW
MLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHT
WLPSVSCIYYVGTKDQRSKLFSQEVCAMKFNVLVTTYEFIMYDRAKLSKVDWKYIVIDEA
QRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPDVFDNRKAFHDWFA
QPFQKEGPAHNIEDDWLETEKKVIVIHRLHQILEPFMLRRRVEDVEGSLPPKVSVVLRCR
MSAIQSAVYDWIKATGTLRVDPDDEKLKAQKNPNYQAKLYKTLNNRCMELRKTCNHPLLN
YPYFNDLSKDFLVRSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVY
RRIDGTTSLEDRESAIVDFNDPDTDCFIFLLSIRAAGRGLNLQTADTVVIYDPDPNPKNE
EQAVARAHRIGQTREVKVIYMEAVVEKISSHQKEDELRSGGSADLEDDLAGKDRYIGSIE
GLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDDERYQETVHDVPSLHEV
NRMIARSEEEVELFDQMDEEFDWTEEMTSHEQVPKWLRASTRDVNTTVADLSKKPSKNML
SSSNLIVQTGGPGGERKRGRPKSKKINYKEIEDDIGEYYEESSEERIIDSGNEEEGDIGQ
SDDDELTGAIGDHQTNNGESDGENPVSGYDYPSRSGSYKKIPPQDDDAGSSESSPESHRS
KEMASPVSSKKFGSLSALDTRPGSVSKRLVDDLEDGEIGASGDSHRDLQRSGSLGHDRDE
GGGEQVLQPTIKRKRSIRLRPRQTAEGADGNDMPAAQPLQVDRSYRSKLRTVGDSHGSRQ
DQSDSSSRLRSLPAKKVANTSKLHVSSPKSGRLNATKEDNAEASRETWDGTSPIGSSSTG
GRMSHMIQKRCKIAISKLQRRIDKEGQQIVPMLTNLWKRIQNGYAAGGVNNLLELREIDQ
RVERLEYVGVMELASDVQYMLRGAMQFYGFSHEVRSEARKVHNLFFDLLKRSFPDTNFQE
ARNALSFSGPTPTLVSTSSPRGAGIRRPTPVDEEEPEPSSPQRRQQRENSRIRVQIPQKE
TKLGGSSSHTDESPVLAHPGELVICKKKRKDREKSAPRTSSPVSPQAMIGRGLRSPVSGS
VTRETRLAAQATHPNNSGAAGDSVGWANPVKRLRTDSGKRRPSHL
NT seq
6438 nt
NT seq
+upstream
nt +downstream
nt
atgcaatctggaggcagtggcggaggcccgacccggggcatgggtccggctggtcggacc
aactccacatcatccgctgcgtctcccacttcttcatcatcttccgtgcagcagcagcag
ctggcgtctaggcagcagcagcagcagcaggggagaaactcagaggcaaatgatggcatg
tttgcctatcatcctggtggggttcaggggatgatgggaggtgtcaactttggttcttcg
tctgcctctttgcagcagcctaggagactatttgactcttctcaacaacaacaacagggt
tcttcccaagagggccagcaaaattttaatccgatgcagcaagcgtatcttcagtttgct
ttacaggcacagcaacaaaaagcacagcagcaagctagaatgggaatgctgggttcttct
aaggatcaagatgcacggatgggtatgttgaatatgcaaggcacaatgcaggcgtctaat
cagcctcaggcctcctcctcgtctaatccatctgctgaacagtttactcggcagatggaa
tcgggtcctcaacaaaggaacgaagcgaaacctcatcctcagcaagttgggactggacaa
ctaatgcctggaaatattagtaggccaatgcaggcaccacagggtgtgaataatatgggg
accaaccaactcgcattatcacagcagtggcaggccatgcaggcatgggcgcgcgagcgt
aatattgatctctcgcatcctgccaacgccaaccaaatgacgcacatactccaggcaaga
atggctgcccaacagaaagctaatgaaggcaatgcggcttcacagtcaccatctattcct
gtgtctagccagccatcttcaggtgttccgggtgataactcgcctcgtcccaactctgct
ggtgatacttctgggcagtcaggatcaggaaaggccagacatgcaatatctaccagctca
cttgcctcgacttccagtcccagaatgatgaaccctgctgcaaatcccttctccgcccaa
gggagagataatccaatgtatcctcgacatttagttcagtctacaaatggaatgccctct
ggaaattccatgcagacgtctgttaatgagacgcatgttttggatcacaatgcgtctaca
aataaaagtttaggttctgctgaacatttgcagatgcagcagcctaggcagctgaatgca
cccagtccaaaagctgctctatctggcgctggtttactcagtaaatcttcccttcagagt
ggacaggggaccaaacaagcacaacaacgatcaggatttaccaaacaacaactccatgtt
ctcaaagcccagatactagcatttcgtcgtctgaagaaaggagaaggttctttgcctcag
gagctttttaaatctattgctccaccaccgcttgaagtgcagacgccgttgcaaattttt
cctgtgagagtacatgttcaggataaatcttcagacaaaactgtagagaaccaagcaagg
tcactggagtctggcaaagagtctcagactgctgcttcatcaaatggacagatttttgct
aaagaggaagataatggtggagatacagaagtacctttggcgacaggccagagccaatta
tttcaaaatctggggaaagaagctgcttctactgatgcggttacgaaagaggagcaacaa
actgatgcattccctgttaagtcagaccaaggagcagatgctagtactcaacagactcct
aaaagtgattctaatactgataagggaaaagctgttgcatctgatggaggccaatctaat
gttccgccacaaacaaactctccccagcagcctaaggatacagcctctgccaggaaatat
cacggaccattgtttgattttcccttcttcactcgaaaacatgacgctatgggatctgca
acagccaatgccaataacaatctcacattagcttatgatattaaagacctgatctgtgaa
gaaggtgcggaattcttcaacaagaaaagaacagacagtttgaagaagataaatggtctc
ctagcaacaaacttggaaaggaaaaggattaggccggatcttgttttacggcttcagatc
gaagagaaaaagctcaggttatcggctcttcagtctcgtgttagagatgaagttgatcga
caacagcaggatataatgtccatgcctgataggccataccgtaaatttgtgaggctgtgc
gaacgacaacgccttgaaatgaatagacaagtactggccaaccagaaagctgtgagagag
aagcagctgaaaaccatttttcagtggcgtaagaaactccttgaggctcactggtctata
cgtgatgcacgcactgctcgtaacaggggggttgccaaataccatgaaaagatgttgaga
gagttctcgaagagaccagatgatggccggaacaaaaggatggaggcattgaaaaataat
gatgtagaaaggtacagggagatgttgctggaacagcaaacaaatatacctggtgatgct
gctgaaagatataatgttctctcttcatttttgacccaaacggaagattatctccataaa
cttggaggtaagattactgccacaaagaatcaacaggaagtggaggaggcagcgaatgct
gcagcaattgccgcgagattgcagggcctttcagaagaagaggtcagggcggcagctgct
tgtgctcgggaagaagttctgatcagaaatagatttgtggaaatgaatgcgccaaaagat
aattcatctgttaacaagtattatactctggctcatgctgtaaatgaagtcgttgtgaga
caaccgtcgatgctccaagctggaactttacgtgattaccagctggttggattgcaatgg
atgctctccttgtataataacaaattaaatgggatcttggctgatgagatgggtcttgga
aaaactgtgcaggtaatggcactgattgcttaccttatggagttcaaggggaattatggg
ccacatctcatcatcgttcccaatgctgttctggtgaactggaagagtgaactccatact
tggctaccatctgtttcatgtatatattatgttggtacaaaggatcaacgttcaaaattg
ttttctcaggaggtttgcgccatgaagttcaatgtcctcgttacgacttatgagttcatt
atgtatgatcgagcaaaactctcaaaagttgactggaaatatattgttattgacgaagca
cagcggatgaaagacagagaatctgttttggcccgagatcttgaccgttatcgctgccag
aggagattacttctcactggaacacctctacagaacgatctgaaagagctttggtcacta
ttgaatctcctccttcctgatgtctttgacaatcgaaaagcatttcatgactggttcgcg
caaccctttcaaaaagaaggtcctgcgcataatatagaggatgactggctggaaactgag
aaaaaagtcatagtcattcacaggcttcatcaaattttagagccgttcatgctcagacgt
cgtgttgaggatgtggaaggttctcttcctcctaaggtttccgtagttttaagatgtagg
atgtctgctattcagagtgccgtttatgattggatcaaagctactggaactctaagagtt
gatccagacgatgaaaaacttaaggctcagaagaatcctaactaccaagccaagttatat
aaaactttaaataataggtgcatggagttgaggaaaacatgcaatcatccgttgctcaat
tatccatatttcaatgatctttccaaggactttctcgtaaggtcatgtggaaaattgtgg
attctggatagaattcttattaagctacagaggacaggccatcgtgtattactcttcagt
acaatgactaaactccttgatatcttggaagagtatttgcaatggaggaggcttgtatac
cgaagaatagatgggactaccagtctagaagaccgggaatcagctattgtggatttcaat
gatcctgatactgattgctttattttcctgcttagtatacgtgcagcgggaaggggtctc
aaccttcagactgctgacacagttgtgatatatgatccggatccaaacccaaagaatgag
gaacaagcagttgccagagcccatcgtattgggcagacaagggaagtaaaagtgatttat
atggaggcagtagttgaaaaaatttccagccatcaaaaggaagacgagcttagaagtggt
ggttcagcagacttagaggatgacttggctgggaaggaccgttatataggatctattgag
ggtctcattaggaataatattcagcagtacaagatcgacatggctgatgaagtcattaat
gctgggcgttttgaccaaaggacgactcatgaagagcggcgaatgacattggagacttta
ttgcatgatgacgagagatatcaagaaaccgtccatgatgtaccttctctccatgaggtg
aacaggatgattgccagaagcgaggaagaagttgagttattcgatcagatggatgaagaa
tttgactggaccgaggagatgactagtcatgagcaggtgcctaagtggcttcgggctagt
accagagacgtgaatactaccgttgcagatttgtctaagaaaccttcaaagaacatgttg
tcaagcagtaatctaattgttcaaactggtgggcctggaggtgagagaaaaagggggcga
cccaagagcaaaaagattaactacaaggaaattgaagatgacattggagaatactatgag
gaaagctctgaagaaaggattattgattctgggaacgaagaagagggggacattggacaa
tctgatgatgatgagctaactggtgctattggtgatcaccaaaccaacaatggtgaatct
gatggagagaaccccgtcagtggttatgattatccttcgcggtctggtagttataaaaaa
atccctccgcaggatgatgatgccggttcttcagaatcttcgccagaaagtcatagatcg
aaagagatggcttctcctgtttcttcaaaaaagtttggctctttgtctgcattggatact
aggccaggttctgtctcgaaaagactggtagatgacctagaagatggggaaataggagcc
tccggggattctcacagagatctccaacgatcaggaagcttgggccatgaccgtgatgaa
gggggaggagaacaggttttgcaaccgacaataaaacggaaacggagtattcgtctaaga
ccccgtcaaacagcagaaggagcagacggtaatgatatgcctgcagctcagccattgcaa
gtcgaccgtagctatagatcaaaactgagaacagttggtgactcacatggttcaagacaa
gatcagagtgattcgtcctcgaggcttaggagtttacctgcaaaaaaggtagctaacact
tccaagctgcatgtgtcatcaccaaaatctggtagattgaatgccacaaaggaggacaac
gctgaagcttctagagaaacatgggatggaactagtcctattggctcttcaagtacaggt
ggaagaatgtcccacatgatacagaaacggtgcaaaattgccattagcaaactccaaaga
agaatcgacaaggaaggtcagcagattgtgcctatgctgacaaatctgtggaagagaatt
cagaatggttatgcagctggaggtgtgaataatcttttggaactgcgagagatagatcag
cgggtggaaaggctagagtacgtaggagttatggaactcgcatctgacgtgcagtatatg
cttaggggagcaatgcagttctatggattctcacacgaggtgagatctgaagcaaggaag
gttcacaatctgttctttgatctactgaaaaggtcttttccagacacgaattttcaggaa
gcaaggaatgctctttccttctctggtccaaccccaactttggtgtctacatcttcccca
aggggagcaggtattaggaggccaacgccggtagatgaggaggaacctgagccaagctct
cctcagagacgtcaacaacgcgagaactcaaggatcagagtacagatacctcagaaagaa
acaaagcttggcgggtcatcaagccacaccgatgagtctccagttttagctcatccaggg
gaactagtgatctgcaagaagaagaggaaagacagagaaaagtctgctccaagaaccagc
agcccggtttcacctcaggctatgataggtcgtggtctcagaagtccagtgtctggttca
gttacaagggaaacaaggctagcagctcaagccactcatccaaacaacagcggcgcggct
ggtgactcagttggatgggctaatccggtgaagaggctaagaacagattctggtaaaaga
agaccgagtcatttgtag
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integrated database retrieval system
