Raphanus sativus (radish): 108853623
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Entry
108853623 CDS
T06014
Name
(RefSeq) protein CHROMATIN REMODELING 8-like isoform X1
KO
K10841
DNA excision repair protein ERCC-6
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
108853623
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rsz03036
]
108853623
03400 DNA repair and recombination proteins [BR:
rsz03400
]
108853623
Chromosome and associated proteins [BR:
rsz03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
108853623
DNA repair and recombination proteins [BR:
rsz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
108853623
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
Motif
Other DBs
NCBI-GeneID:
108853623
NCBI-ProteinID:
XP_018482533
UniProt:
A0A6J0NDH0
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Position
4:3248530..3253166
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AA seq
1164 aa
AA seq
DB search
MEEEEDRFLLSSLGVTSANPADIEQTILDEATKKLDNDGSVEERSIQLEGGNVLPSSHSE
ILNRLRAVKFEIDAVASTVEQAEEEEGDDAGVQSGSVLQNALATDRLRSLRKRKNELEKE
LSGLRGQSGGADDRSDILRDLVKGEPSLKRKLKEIRKPSKREGKKVRVVSFHEDTDFDAV
FDAASAGFVETERDELVRKGILTPFHKLEGFERRLQQPGPSNTRNLPEGEDENEESSSID
RAVQSMSLAAKARPTTKLLDAQDLPKLEPTPVPFRRLRKLYKTNDSSDSDAKRSKAGKSK
KKRPLPKRKWTKRISHEDSSLQENEDERRISTTSSCEEEELDDLDDVDDDETSSVPLEGG
LNIPERIFNKLFDYQRVGVQWLWELHCQKAGGIIGDEMGLGKTVQVLSFLGSLHFSKMYK
PSIVICPVTLLRQWRREARTWYPDFHVEILHDSAKDSNGKGRANASESDYDSEGSVESDH
EQKSKNTKKWSSLINRVLKSDSGLLITTYEQLRLHGEKLLNIEWGYAVLDEGHRIRNPNA
EITLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFPGKLGVLPVFEAEFSVPITVGGY
ANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAHLTKKTEHVLFCSLTVEQRSTYRA
FLASSEVEDIFDGNKNSLYGIDVMRKICNHPDLLEREHSHQNPDYGNPERSGKMKVVAEV
LKVWKQQGHRVLLFSQTQQMLDILESFLVASEYSYRRMDGLTPVKQRMALIDEFNNSDDV
FVFVLTTKVGGLGTNLTGANRVIIFDPDWNPSNDMQARERAWRIGQKKDVTVYRLITRGT
IEEKVYHRQIYKHFLTNRILKNPQQKRFFKARDMKDLFILNDDGDSNASTETSNIFSQLS
EDINIIGAQTESTTDTTTQLDIHDAADEVSGEKGAETTDRNGEPVDEETNILKSLFDAHG
IHSAVNHDAIINANDEEEKMRLEHQASQVAQRAAEALRQSRMLRSRESISVPTWTGRSGC
AGAPSSVRRRFGSTVNSRLTTADKSSAVKNGISAGLSSGKAPSSAELLSKIRGNREQAIG
VALEHTQTPNPSSSSLQPEVLIRQICSFVQRRGGSTDTSSIVNHFSDRVPAKDVPLFKSL
LKEIATLRKDPNGSVWVLKSEYKD
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagaagaggataggtttctgttgagtagcttaggtgtgacatccgctaatcct
gcagatatcgaacagacgattctcgatgaggcgacaaagaagcttgataacgatgggagt
gtggaggagaggtctatacagctggaaggaggcaatgtccttccatcaagccatagcgag
attttgaatagactgagggctgtgaagttcgaaatagatgctgttgcatcgaccgttgag
caagcggaggaggaggagggtgatgatgcaggagtgcagagtggttctgtacttcagaat
gctcttgctacagaccgtcttagaagccttaggaagagaaaaaatgaacttgaaaaggag
ctctctggtttacgtggtcagagcggtggtgctgatgatcggagtgatatactgcgggat
ctggtgaagggagagcctagtcttaagagaaaattgaaagagattcggaaaccaagcaag
agagaagggaagaaggtgagagtagtgtcgtttcatgaggatacggattttgatgccgtt
ttcgatgctgcttctgcaggttttgttgaaacggaaagagatgaattggttagaaaagga
attttaactcctttccacaagctcgagggttttgaacgccgacttcaacaacctggaccg
tcaaacacgcgtaacttacctgaaggagaagacgaaaatgaggagtccagcagtattgat
agagctgtccaatcaatgtcgctggctgcaaaagctcgcccaacaaccaagctacttgat
gcacaggacttgccaaagcttgaaccgacccctgttccttttagaaggctaagaaagctt
tacaagactaatgattcttcggatagtgatgcaaagcgaagtaaagctgggaagagcaaa
aagaagcggcctttgcctaaaaggaaatggacaaagcggatttctcacgaagactctagt
cttcaagaaaatgaagatgaacggagaatctcgaccacgtccagttgtgaggaagaagag
ctagatgatcttgatgacgtggacgacgacgagacatcctctgtaccgcttgagggtgga
ttaaacattcctgaacgtatatttaataaactttttgattaccaaagagttggagtgcag
tggctctgggaacttcattgccaaaaggctggtggcattatcggggacgagatgggtctt
ggtaagactgttcaggtcttatcttttctcggatccttgcatttcagcaagatgtacaag
ccgagtattgtcatatgtcctgtcacactcttgcgtcagtggagaagggaagcacggaca
tggtacccggattttcacgtggaaatactccatgactcggcaaaagattcaaatggcaaa
ggacgagccaatgcctctgaaagtgattatgatagtgaaggttcagtcgagagtgatcat
gagcaaaagtctaagaacaccaagaaatggagttctttgattaaccgggttctaaaatct
gactcggggctactcatcaccacatatgagcaattgaggctgcatggtgagaagctgctc
aatattgagtggggttatgcagtactggacgaaggccatcgtatccggaacccaaatgct
gaaattactttggtgtgcaaacagttgcagaccgtccatcgaattattatgactggggca
ccaatccagaataaactgacagaactctggtccttgttcgattttgttttcccgggaaaa
ctgggcgtcctacccgtctttgaggctgagttttctgttcccataactgtgggtgggtac
gcaaatgcgtctccattgcaagtgtcgacagcctacagatgtgcagttgttcttcgtgat
ctgatcatgccatacctcctccgccggatgaaggctgatgtgaacgcacatctcacaaaa
aagactgaacatgttctcttctgcagcctcacagtggagcagagatctacctacagggcg
tttcttgcgagctcagaggtagaagatatttttgatggcaacaagaactctctgtatggg
attgatgtgatgcgtaagatttgcaaccaccctgatctactcgagagagaacactctcac
cagaacccagattatgggaatccagaacgcagtgggaagatgaaggttgttgcggaagtt
ctcaaggtctggaaacagcaaggacaccgtgtacttctgttttcgcagactcagcaaatg
cttgacatcctagaaagcttcttggttgcaagcgagtatagttaccggaggatggatggt
cttacgccagtgaaacagaggatggcgttgatcgatgagtttaacaactcagatgatgtg
tttgttttcgttctgacgacgaaggtgggtggtttgggaacaaacttgactggggcgaat
agggtcatcatctttgacccggattggaacccctcaaatgatatgcaggcaagggaacga
gcttggcgtatagggcagaagaaggatgttactgtttacagattgatcacacgagggaca
attgaggagaaagtatatcatagacagatatataaacattttctcaccaataggatcctg
aagaatccacagcagaaaagattcttcaaagctagggatatgaaagatcttttcatcctg
aatgatgatggtgacagcaacgcatccacggagacttctaacatcttcagtcagctgtct
gaagatataaacatcataggagctcaaacagagagtacaaccgataccaccacacaactt
gatattcacgatgcagcagatgaagtctcaggggaaaaaggtgcggaaaccacagataga
aatggtgagccagtggatgaagagacgaatatcttgaagagtctcttcgacgcacatgga
atacatagtgctgtgaaccacgacgccatcattaacgcaaacgacgaggaagagaagatg
agacttgaacaccaggcatctcaagtagcacagagagccgcggaagcattgcgccaatca
cggatgctgcgtagccgagaaagcatctcagtgcccacatggacgggaagatctggctgt
gcaggtgcaccttcatctgtccggaggagattcggttcaactgtgaattcccggttaacc
acagcagacaaatcatcagctgtcaagaacggtatcagcgcgggtctatcttcaggcaaa
gcaccgtcttccgcagagcttctcagcaaaatccgagggaacagagaacaagccattggc
gttgcccttgagcatacgcaaactccaaacccgtcttcttcttcgttgcagcccgaggtc
ctgatccgacagatatgcagctttgtacaacgaagaggcggaagcacggacacgagcagc
attgtcaaccatttctcggacagagtccctgctaaagatgtaccgttgtttaagagtctc
ttgaaggagattgccacgcttaggaaggatccaaacggttcggtgtgggtcctcaaatca
gagtacaaagactga
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