Raphanus sativus (radish): 108854029
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Entry
108854029 CDS
T06014
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108854029
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rsz03041
]
108854029
Spliceosome [BR:
rsz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
108854029
Complex C
U5 SnRNP specific factors
108854029
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Ortholog
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GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
108854029
NCBI-ProteinID:
XP_018483018
UniProt:
A0A6J0NGQ9
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All DBs
Position
4:37332170..37342095
Genome browser
AA seq
2360 aa
AA seq
DB search
MWNNNDGMPLAPPGTGGPMIPPPHPSYAPLPPPSSNPTPPPVEPTPEEAEAKLEEKARKW
MQLNSKRYGDKRKFGFVETQKEDMPPEHVRKIIRDHGDMTSKKFRHDKRVYLGALKFVPH
AVFKLLENMPMPWEQVRDVKVLYHITGAITFVNEIPWVVEPIYMAQWGTMWIMMRREKRD
RRHFKRMRFPPFDDEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVHTWFYDHKPLVKTK
LINGPSYRKWNLSLPIMATLHRLAGQLLSDLIDRNYFYLFDMPSFFTAKALNMCIPGGPK
FEPLYRDMEKGDEDWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLCVYHSPMVM
YIKTEDPDLPAFYYDPLLHPISNTNKERRERNVVEDDDDDDFTLPEGVEPLLKDTHLYTD
TTAAGISLLFAPRPFNMRSGRTRRSEDIPLVSEWFKEHCPPAYPVKVRVSYQKLLKCYVL
NELHHRPPKAQKKKHLFRSLAATKFFQSTELDWVEVGLQVCRQGYNMLNLLIHRKNLNYL
HLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANVQFRLGNVDAFQLAD
GLQYIFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRV
WLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDA
MPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHY
NRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEALAIYTTTVHW
LESRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQQQREELGLIEQAYDNPHE
ALSRIKRHLLTQRGFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLF
PNWIKPADSEPPPLLVYKWCQGINNLQGIWDTGDGQCVVMLQTKFEKFFEKIDLTMLNRL
LRLVLDHNIADYVSAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQFYGLLLDLLLLGLT
RASEIAGPPQMPNEFMTFWDTKVETRHPIRLYSRYIDKVHIMFKFTHEEARDLIQRYLTE
HPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENGFVS
VYSKDNPNLLFSMCGFEVRILPKIRMTQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDE
HMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKI
QTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSKQTDVGVTHFRS
GMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRG
IPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVI
QALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFT
LWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQ
VLDQELDALEIETVQKETIHPRKSYKMNSSCADVLLFAAHKWPMSKPSLVAESKDVFDQK
ASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSAF
GNWFPGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQ
IIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQ
LAKWKTAEEVAALVRSLPVEEQPKQVIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQA
CLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLK
PDKSVVTEPHHIWPSLTDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAE
ITPPSQQRQQIAEIEKQAKEASQLNAVTTRTTNVHGEELIVTTTSPYEQTAFGSKTDWRV
RAISATNLYLRVNHIYVNSDDIKETGYTYIMPKNILKKFICVADLRTQIAGYLYGISPPD
NPQVKEIRCVVMVPQWGSHQHVNLPSALPEHDFLNDLEPLGWLHTQPNELPQLSPQDVTA
HSRILESNKQWDGEKCIILTCSFTPGSCSLTSYKLTQAGYEWGRLNKDTGSNPHGYLPTH
YEKVQMLLSDRFLGFYMVPENGPWNYNFMGVKHTVGMKYSVKLGSPKEYYHEEHRPTHFL
EFSNMEDADIVEGDREDTFA
NT seq
7083 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacaacaacgacggtatgccgttagcccctcccggcaccggcggcccgatgatt
ccgccaccgcatccttcttacgctcccctcccgccgccttcctctaatccgactcctcct
cccgtcgagcctactccggaagaagccgaggcgaagctcgaggagaaggcccgtaaatgg
atgcagctgaactcgaagcggtacggcgacaagaggaagttcggattcgtggagactcag
aaggaggacatgcctcctgagcacgtcaggaagattatcagggatcatggtgatatgaca
tcgaagaagtttcgtcatgataaacgtgtataccttggagctcttaagttcgtccctcac
gctgtcttcaagctcctggagaatatgcctatgccttgggagcaggttcgagatgttaag
gttctctaccatatcactggagctattacgtttgtgaacgagattccatgggttgtagaa
cctatttacatggctcagtggggtactatgtggattatgatgcgaagagagaagagggat
cgtcgtcatttcaagcgaatgcggtttccaccgtttgacgatgaagagcctccactggac
tatgctgacaacttgttggatgtggatcctcttgagccgattcagttggagctagacgag
gaagaagattctgctgtgcacacttggttttatgaccacaagccactagtgaagaccaag
ctgattaatggtcccagttaccggaagtggaatctctctcttcctattatggcgaccctt
cacaggcttgcgggccagttgctgtctgatttgatcgatcggaactacttctacttgttt
gacatgccgtctttcttcaccgccaaggctctgaacatgtgcatacctggtggtcctaag
tttgaacctttgtaccgtgatatggagaaaggggatgaagactggaatgagttcaacgac
atcaacaagcttatcattcgttcccctcttcgaactgagtacaggatcgcttttccccat
ctgtacaacaatcgtcccaggaaagtcaaactctgtgtgtatcacagtcctatggtgatg
tatataaagaccgaggatcctgatcttccagcgttttattacgatccgttacttcacccg
ataagcaacaccaataaggaaaggcgtgaaaggaacgttgttgaagatgatgacgatgat
gactttaccttaccagagggagtggaacctttactgaaagacacccacctctacactgac
actacagctgctggtatttcattgttgtttgccccacgacctttcaatatgaggtctggg
agaacaaggcggtcagaagatattcccctggtgtcagagtggttcaaggagcactgtcct
ccagcttatccggttaaggttcgagttagttaccaaaagcttttgaagtgctacgtgctg
aatgagctgcaccatagaccccctaaagcccagaagaagaagcacttattccgatctctt
gcagctacaaagtttttccagagtactgagttggattgggttgaagtgggtctgcaagtc
tgcaggcaggggtataatatgcttaacctgctgatccacaggaagaatttgaactacctg
caccttgactacaacttcaacctcaagcctgttaaaacattgaccaccaaagagcgaaag
aagtcacgttttgggaacgctttccatctctgccgtgagatcctccggctgacaaagctt
gtagttgatgcgaatgtccagttccgacttggaaatgttgatgctttccagttggctgac
ggtctgcagtatattttctcccacgttggccagttgacgggtatgtaccggtacaaatac
agactgatgaggcagattaggatgtgcaaggatttgaagcacttgatatactaccgtttc
aatacgggtcctgtgggtaagggaccagggtgtggcttttgggctccaatgtggagggta
tggttgtttttccttcgtggaatagttcctcttctcgaaagatggttaggaaatcttctt
gctcgtcagtttgaggggcgtcattcaaaaggagttgccaaaactgtcacgaaacagaga
gttgaaagccacttcgatttggaactgcgagctgctgtcatgcatgacgttcttgatgcc
atgccagagggtatcaagcaaaacaaagctcggacaatattgcagcaccttagcgaggca
tggcgatgttggaaagccaatatcccctggaaggtccctgggttacccgtgccaattgag
aatatgatcctgcgttatgtcaagtctaaggctgattggtggacaaatgttgctcactac
aatcgtgagcgtatcagaagaggggctacggttgataagactgtttgcagaaagaatcta
ggaaggttgactcgtctctggctaaaggcagaacaggaacggcagcacaattacctgaaa
gatggtccatatgtcactcccgaggaagcactagcaatttatacaactactgttcactgg
ctggaatcgaggaaattttctccaattccattcccgccattgtcgtacaaacatgacaca
aagttgcttatcctggcccttgaaagactgaaggaatcatacagtgttgctgtgaggttg
aatcagcagcagcgggaggagcttggtctgattgaacaagcgtatgacaatcctcatgaa
gctctgtccagaattaaacgtcatcttctcacccagcgtggtttcaaagaggttggcata
gagtttatggatctatacagctacttgattccagtttatgaaatagagcctctggagaaa
attactgatgcctatcttgaccaatacttgtggtacgagggtgataagcgccacttgttc
ccaaactggatcaagccagcagactcagagcctccaccacttctggtttacaagtggtgt
caaggtatcaataatttacaaggcatatgggacacaggggatgggcaatgtgtggtgatg
ctccagactaagtttgaaaagttctttgagaagatcgatttgaccatgttgaacaggctg
cttcgtttggttcttgaccacaatattgcggattacgtgtctgccaagaataatgtggtt
ctgtcttacaaagatatgagtcatactaactcgtatggtctgattaggggacttcagttt
gcatcttttgttgttcagttttatggactactgcttgatcttttgcttcttggtctgact
cgggcgagtgaaattgctgggccaccacagatgcctaacgagtttatgacattttgggat
acaaaagtggagacacgccatcccataagactgtattctcgctacatagacaaagttcat
ataatgttcaaatttacccatgaagaggccagggatcttattcagcgttatcttactgag
catcctgatcccaacaatgaaaacatggtgggatacaacaataagaagtgttggccaaga
gatgcaaggatgaggttgatgaaacatgatgtcaatcttggtagaagtgtcttctgggac
atgaagaatcgtcttcctcggagtatcacaactttggagtgggagaatggctttgtctct
gtatacagcaaggataatcctaacctgctattcagcatgtgtggatttgaagttcgcata
cttccaaaaatcaggatgactcaggaagctttcagcaacacaagagatggtgtttggaat
ctgcaaaatgagcagaccaaggagaggactgccgttgcttttctgcgggttgatgatgaa
catatgaaggtgtttgagaatcgtgttaggcagatcctcatgtcttcaggatcaaccacc
ttcaccaaaattgtcaataaatggaatacagctcttattggtctcatgacttactttcgt
gaagccactgtgcatacgcaagagctcttggatctacttgtcaagtgcgaaaacaaaatt
caaacaaggattaagatagggctgaactcaaagatgcctagtcgatttcctcctgttatc
ttctacactccaaaggaaattggtggattgggaatgctgtcaatgggtcatattttgatt
ccacaaagcgaccttcggtacagcaagcaaacagatgttggggtaacccactttaggagt
ggaatgagccatgaggaagatcagcttattccgaatctatatcgttacatacagccttgg
gaaagtgagtttattgattcacagcgggtgtgggcagagtatgctttaaagaggcaggaa
gcacaggcccaaaataggcgtcttacattggaggatttggaggattcttgggatagggga
attcctcgaataaataccctgtttcagaaggataggcacacgttagcgtatgataaaggt
tggagggttcggaccgactttaagcagtaccaggtcctcaaacaaaatcctttctggtgg
acacaccagaggcatgatgggaagttgtggaacttaaacaactaccgaactgatgttatc
caagctcttggaggtgttgagggtatccttgagcacacgttattcaaggggacatatttc
ccaacatgggagggtcttttctgggagaaggcatctgggtttgaggagtcgatgaagtat
aagaagctgacgaatgcacagaggtctggtctgaaccagattccaaatagaagattcacg
ctttggtggtcgccaacaattaatcgagcgaatgtgtatgtgggtttccaagtgcaattg
gatctgacaggaatatttatgcatggaaagattcctacactcaagatatcactgattcag
attttccgtgcccatttgtggcaaaagatccatgagagtgttgttatggatctttgtcaa
gtattggaccaagagttggatgctttggagatagaaactgttcagaaggagacaattcat
ccaaggaagagttataagatgaacagttcttgcgctgatgttcttctatttgctgcacat
aaatggccaatgtcaaaaccaagcctggttgctgagtcaaaggatgtgttcgaccagaag
gctagcaacaagtattggatagatgtgcaacttcggtggggagattatgattcccatgat
attgagcgttatactagggccaaattcatggattataccactgataacatgtcaatctat
ccatctccaacaggtgtaatgattgggcttgatctggcatacaatttgcattctgccttt
ggcaattggttcccaggttctaaacctcttctagctcaggcgatgaacaagatcatgaag
tctaatccagctctgtacgtgttgagagagaggataaggaaaggtttgcagttatactca
tctgagcctacagagccatatctgtcttctcaaaactatggtgaaatattcagcaatcaa
ataatatggtttgtggatgataccaatgtctatcgtgtgacaattcacaagacatttgaa
ggaaatttaactacaaagccaatcaatggtgcgatctttatcttcaatccaagaactggg
cagctattcctgaaggttatccatacaagcgtttgggctggtcagaagcgtcttggtcag
ctagcgaaatggaaaactgctgaagaggtggctgcacttgtgcggtctctccctgttgaa
gaacagccaaaacaagttattgttactcgtaaaggaatgctcgatccccttgaggtccac
ttgctggatttccccaacattgttatcaagggaagtgaactgcagcttccgttccaggct
tgccttaagattgagaaatttggtgatctgattttgaaggccacagaaccacagatggtc
ctattcaatatctatgatgattggttgaagagtatctcttcgtatactgccttttcaaga
ctcattctgatccttcgcgctcttcacgtgaataatgagaaggctaagatgttgttgaag
cccgacaagtctgttgtcactgagccacatcacatctggccctctctcactgacgaccag
tggatgaaggtggaggtagctcttagggatcttatcctatctgactacgcaaagaagaac
aatgtgaatacctcagctctgacacaatcagagatcagagatattatccttggagctgag
attaccccaccttctcaacagaggcaacagatagctgagattgagaaacaggcaaaagaa
gccagccagcttaatgcagtcacaacaagaacgacaaatgttcatggtgaagagctcatt
gtcactaccactagcccctacgagcaaactgcattcggttccaagacagattggcgtgtg
cgtgcaatatcagctaccaatctctacctcagagtcaatcacatctacgtgaactcggat
gacataaaggagacgggatacacatacatcatgccaaagaacatcctgaagaagttcata
tgcgtagcagatcttcggactcaaattgctggatatctgtatggtatcagcccaccggat
aatccccaggtgaaggaaatccgttgtgttgtgatggtgccgcagtggggaagtcaccag
catgtgaacctgccgtctgctcttcctgagcatgatttcttgaatgatctcgagccattg
ggatggctgcacacacagcctaacgagctccctcaattgtcaccacaggatgtgaccgct
cattcccgcattctggagagcaacaagcaatgggatggagaaaaatgtatcatcctgaca
tgcagtttcactccggggtcctgctctttgacatcatataagctgacccaagccggatat
gaatggggacgtctcaacaaggacacaggcagcaatcctcatggctaccttcccacccat
tatgagaaggttcagatgctattgagtgaccgcttcctcgggttttacatggttcctgag
aacggaccgtggaactacaactttatgggcgtgaagcacacggtgggcatgaaatacagc
gttaaacttggatcccccaaggagtactatcacgaggaacatcgacccactcatttcctc
gagttcagcaacatggaagacgctgacatcgttgagggagatcgtgaagacacctttgct
tga
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