Raphanus sativus (radish): 108854220
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Entry
108854220 CDS
T06014
Name
(RefSeq) probable polygalacturonase At2g43860
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Module
rsz_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108854220
Enzymes [BR:
rsz01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
108854220
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
NosD
LysM3_LYK4_5
Motif
Other DBs
NCBI-GeneID:
108854220
NCBI-ProteinID:
XP_018483237
UniProt:
A0A6J0NET3
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Position
4:complement(42523555..42525244)
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AA seq
409 aa
AA seq
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MIYKISCLLLSLALIFLDFVLIPSLAKPTPITSLNVLTYGAKPDGSKDSTKAFLAAWEVA
CASPKPTTIIVPKGRFLVGNLVFQGKKCTDAPISIRIAGSIIAPEDYKVIASSLQWILFD
GVTNVSIYGGLLDAQGSSLWKCKNNGGKKCPTGAKTLLFTHSNNITINGLTSINSQKFHI
VIEESNNVNIDGVKVSADADSPNTDGIHIENSHSVNITNSRIGTGDDCISIGPGSTYVSI
QGIQCGPGHGISIGSLGRSEDEQGVENVIVSNVDFTSTDNGVRIKTWGKYSKSFVRNIVF
KHIKMKRVKNPIIIDQHYCLDKPCPKQESGVEISNVRYEDIQGTSNTEVAVMLDCSKEKP
CTDIVMGNVNLLLQMVNGSAQASCNNANGLANDVVIPFTPCLKRDMLLT
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgatttacaaaatatcatgtcttcttctttctctagctctcatctttcttgatttcgtt
ttaatcccatctctagccaaaccgaccccaatcacatcccttaatgtcttaacctacgga
gctaaaccagatggctcaaaagactcaaccaaagccttcttagccgcgtgggaagttgca
tgtgcctctcctaagcctacgactattattgtaccaaaaggaaggttcttggtgggtaac
cttgtattccaaggcaaaaagtgtaccgacgctcctatatctattcgtatagccggttca
atcattgctccggaggattataaagttatcgcaagctcactacaatggatcttgttcgat
ggcgttactaacgtttccatctatggtggattacttgatgcgcaaggctctagtttgtgg
aaatgcaagaacaatggtggcaaaaaatgccctactggtgctaagactttgttatttact
cattcgaataacataactatcaacggtttaacgtcgatcaacagccagaagttccatata
gttatcgaggagagcaataacgtcaatattgacggcgttaaagtttctgctgatgctgat
agcccaaacaccgatgggatccacatcgagaactctcactcagtgaacatcactaactcg
agaattggaaccggtgacgattgcatctccatcggtccaggatccacgtatgtttctata
caaggcattcaatgcggtccaggccacggcattagtattggaagtcttgggagatcagag
gacgaacaaggagtggagaacgtgattgtgagtaacgtggatttcacgtcaacggataac
ggagttaggatcaagacgtggggaaaatatagcaagagctttgttagaaacattgttttc
aaacatattaagatgaagagggtcaagaacccgatcatcatagaccaacactattgtctt
gacaaaccttgccctaaacaggaatctggagttgaaatatccaatgttagatatgaagat
atacaaggaacatcgaatacggaagtggcggttatgttggattgcagtaaggagaaacca
tgtaccgatattgtaatgggtaatgtgaatctcctcttgcaaatggttaatggatcggct
caggcttcttgcaataatgcaaatggattagcaaacgacgtcgttatcccgttcactcct
tgtctaaagagagacatgcttctgacatga
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