Raphanus sativus (radish): 108854255
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Entry
108854255 CDS
T06014
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108854255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108854255
03012 Translation factors [BR:
rsz03012
]
108854255
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108854255
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
108854255
Translation factors [BR:
rsz03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
108854255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
DEAD
R3H
Helicase_C
HA2_C
HA2_N
AAA_22
Ank_5
Ank_2
nSTAND3
AAA_19
Ank
ATPase
NPHP3_N
AAA_7
T2SSE
Sigma54_activat
AAA_11
Ank_3
Rad17
AAA_16
Motif
Other DBs
NCBI-GeneID:
108854255
NCBI-ProteinID:
XP_018483286
UniProt:
A0A6J0NGP7
LinkDB
All DBs
Position
4:complement(37085526..37091570)
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AA seq
1312 aa
AA seq
DB search
MGNKRFRSENAAGKPSSVEATRIWASKVIEDFRASDNEVYTFEHNLSNNERGVIHQMCRK
MGIQSKSSGRGDQRRLSIFKGTYRNGKSKGAKEKSNREKLRCVSFPPEADAILQELFTYY
PPCDGDTAATSFNKYLGGHSRKQGEWKDDFFRRPQMSGDEILAKVASLSSRLRNDRALQE
ISKLRSRLPITSFRDAITSAVESNQVILISGETGCGKTTQVPQYLLDHMWASKRETCKIV
CTQPRRISAMSVSERISCERGESIGDNIGYKVRLQSKGGRHSSVVFCTNGILLRVLVGKG
SGSYVSDITHIIVDEIHERDCYSDFMLAIIRDLLPSNPHLRLILMSATLDAERFSGYFGG
CPVVRVPGFTYPVRTLYLEDVLSILKSGGDNHLSSANLSMPDQNFALTDEDKLALDEAII
LAWTNDEFDALLDLVSSRGSPEIYNYQHQSTLLTPLMVFAGKGRISDVCMLLSFGADPNL
KSKDGMTALELAESEDQLEAAQIIREHAESSQSNSHQAQQILDKYMATINPEQVDVSLIQ
QLMRKICGDSEDGGAILVFLPGWDDINKTRQRLLDSPYFSDGSRFDIICLHSMVPAGEQK
KVFSRPPRGCRKIVLATNIAESAVTIDDVVYVIDSGRMKEKSYDPYSNVSTLQSSWVSKA
NAKQREGRAGRCQPGICYHLYSRLRAASMPEFKVPEIKRMPVEELCLQVKILDPNCKTND
FLQKLLDPPVDQSIANALSILQDIGALTPEEELTELGEKFGHLPVHPLISKMLFFAVLVN
CLDPALTLACAADYKEPFTMPMSPVERQKAAAAKLELASLCGGDSDHLAVVAAFDCWKNA
KERGLAAEFCSQYFVSPSAMKMLDQMRSQLESELKRHGIIPNDISSCSQNSRDPGILRAV
LAVGLYPMVGRLCPSFGNNRRSLVETASGAKVRVHSLSNNFNLSSRKYDESLVVFDEITR
GDGGMHIRNCTVARDLPLLLVSTEIAVAPTESSEADDSDDEEEDDEETGEEEEEEGDNRN
EDGMHIHKAESRREQKNMMSSPENSVKLVVDRWLPFRTTALEVAQMYILRERLTASILFK
VRHPRENLPPHLGASMYAIACILSYDGHAGLASPSESMRPKHSRTEMYETGGWEEQPNSF
LNSLFWSLSLKENNKPSSSGHMNRSRQHGFNAVPTESASMHRQQNIKQRNPKSAYNGDSG
KKNEKRFDNHTHGIHQPEAATTAKQSKHKSANSLGSGNKKENMPSDQVYGNHQPSTAPRE
AAAPLPKHQISKKAKTSPANNSDSGKKKTQYVPKIDLRKKERENKVEQKGNA
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atggggaacaagaggttcaggtctgaaaatgcagcaggcaagccaagttccgtcgaagct
actaggatctgggcttctaaagtcatcgaagacttccgagcctccgacaacgaagtttac
acgtttgagcataatctttcgaacaacgaacgtggcgtgatccatcagatgtgtcggaaa
atgggtattcaatccaaaagctccgggcgtggggatcagaggcgtctttctatattcaaa
ggcacgtacagaaatggaaagagcaaaggagctaaggagaagtcgaacagagagaagctc
agatgcgtctcgtttcctcccgaggccgatgctattctccaggagctgtttacttattat
ccgccttgcgacggagacaccgctgcgacgtcgtttaacaagtacttaggcggccactcc
cgtaagcaaggggagtggaaagatgattttttccggaggccacaaatgagcggtgatgag
atcttggcaaaggtggcgtctttgagttctaggctcaggaatgatagagctcttcaggag
atctctaagttgcggtcgaggcttcccatcacatcgtttagagacgctatcacatctgct
gttgaatctaatcaggttattctcatttctggtgaaactggttgcgggaaaactactcag
gtgcctcaatatcttctagaccatatgtgggcaagcaaaagagaaacttgcaaaattgtg
tgcacccaacctcgtcgtatctccgcaatgtcagtttctgaaagaatatcttgtgaaaga
ggtgaaagcattggagataacattggttacaaggttcgactgcagagcaaaggtggaaga
cactcatcagttgttttctgcaccaatggcattctcctgagagtgcttgtaggaaaaggc
tctggtagctatgtttccgacataactcacatcattgtggatgaaatccatgaaagggat
tgctactccgattttatgttggcaattataagggacttgcttccatcaaatcctcatctc
cgtctgatcttaatgagtgctacgcttgatgctgagagattttcaggatattttggaggt
tgcccagttgtccgtgtccctggattcacttatccagtgagaactttgtatttggaggat
gtgctctctattctgaaatcaggtggagataatcacctaagctctgccaacttgagtatg
ccagaccagaattttgctttaacagatgaagataaacttgctttagatgaagcaatcata
ttggcttggacgaatgatgagttcgatgccctcttagatctagtttcttctcggggaagt
cccgagatctacaattatcagcaccaatcaaccttactgacaccacttatggtatttgct
ggaaagggaagaatcagcgatgtatgcatgctcctctcatttggcgcagacccgaactta
aagtctaaagatggcatgacagcgttagaattggccgaatcagaggatcagctagaagct
gctcagatcatcagggagcatgcagaaagttctcagtctaattctcatcaagcacaacag
atactcgataagtacatggcgacaatcaacccggagcaggtcgatgtgagtcttatacag
cagctaatgaggaaaatatgtggcgactcagaagatggtggtgccattcttgtttttcta
cctggatgggatgatataaataaaacaagacagagattacttgatagcccttacttctcg
gatggtagtagattcgacattatatgtcttcactcaatggttccagcaggggagcagaag
aaagtttttagtcgccctcctcgaggttgtcgcaagattgtgcttgccacgaatattgct
gaatcagcagtaaccattgatgatgtggtttacgtgatagatagcggccggatgaaggag
aagagctatgatccttacagtaacgtttcaacacttcagtcttcatgggtatcgaaagca
aatgcgaagcagcgcgagggtcgtgcaggacgatgccagcctggcatttgttatcatcta
tactctagacttcgtgcagcctctatgccagagtttaaagttcctgagattaagaggatg
cctgtagaagaactatgcttacaggttaagattctagatccaaattgtaaaacaaatgat
ttccttcagaaactgttggacccgcctgttgatcaaagtatagcaaacgccttgagcatc
ctacaagacatcggggccctgacacctgaggaagagctgacagaacttggagagaaattt
ggtcatctcccagtacatcctctgataagcaaaatgcttttcttcgctgtattagtaaac
tgtctggatccagcactcactctggcatgtgcagcggactacaaggagccgtttaccatg
cctatgtcgccagtggaaagacagaaagctgctgctgcgaaacttgaacttgcgtcactc
tgtggaggcgacagcgatcacctagcggttgttgctgccttcgactgctggaaaaacgcg
aaagaaagaggtcttgcggctgagttctgctctcagtactttgtctccccaagtgctatg
aagatgctggatcaaatgcgtagtcaactcgagtcagaacttaaaagacacgggattatt
cctaatgacatatcaagctgtagccagaactcgcgtgatccgggcatactccgtgctgtc
ctagctgtgggattgtatcctatggtgggaagattatgtccctcttttggtaataatcga
agatcgttagtagagactgctagtggtgctaaagttcgtgtgcattcgctctcaaacaac
ttcaacttatcttcaaggaagtatgatgagtctttagttgtgttcgatgagatcacacgt
ggagatggaggcatgcacataagaaactgcaccgttgctcgcgatctccctttgttactg
gtatcgacagagatagctgtggctcctacagagagcagtgaagctgatgatagtgatgac
gaagaagaagatgatgaagaaacaggagaagaagaagaagaagagggagataatcgtaat
gaagacggaatgcatatacataaagcagagagtaggcgtgaacagaagaacatgatgtct
tcacctgaaaattcagtcaagttagtagttgatcgctggctgcctttcagaaccacagcc
cttgaagttgctcaaatgtacattttgcgtgagcgactaacggcatccatattgttcaaa
gtaagacatccccgggaaaatttaccgcctcatctaggagcttctatgtatgcaatagct
tgtatcctctcatatgatggtcatgcgggacttgcatctccatctgagtctatgaggcca
aaacattcgaggactgagatgtatgaaactggaggatgggaagagcaaccgaactccttc
ctcaactccctgttttggtctctgagtctgaaagagaacaacaagccttcttcttctggt
cacatgaataggagtcgacagcatggcttcaacgcggttccaacagaatctgcatcaatg
cataggcagcagaacatcaagcagagaaaccccaaatcagcctataatggggattcaggt
aagaaaaatgagaaaaggtttgataatcacactcatgggattcaccaacctgaagctgca
actactgctaaacaatcaaagcacaaatcagccaacagtttgggttcaggtaacaagaaa
gagaacatgccttctgatcaggtctatgggaaccaccaaccaagcacagctccaagagag
gctgccgcaccattgcccaagcatcaaatcagtaagaaagcaaagactagtccagccaac
aactcggattcgggcaagaagaaaacccagtatgttccaaagatagatctccgtaaaaag
gaacgcgaaaacaaagtagaacagaaaggaaatgcatga
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