Raphanus sativus (radish): 108854353
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Entry
108854353 CDS
T06014
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC108854353
KO
K23288
syndetin
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rsz04131
]
108854353
Membrane trafficking [BR:
rsz04131
]
Protein recycling
Others
EARP complex
108854353
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
108854353
NCBI-ProteinID:
XP_018483394
UniProt:
A0A6J0NFV8
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Position
4:35790019..35798291
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AA seq
1117 aa
AA seq
DB search
MQPNLFPFLFNGGADLNGFERSRLFXLLSSQGHGGGTMDFSKVGEKFLSSVKSAKSLGLL
PSSSFSDRPEIPARATAAAAVARALAGLPPDQRLSISSTATELSSIYGNNMPPPQLVEEL
EEGFYQEDFDPVRHILENIPDDQSELAYFEKQATLRLVQLDSVAEDLSHHVMEHHEVMVK
GMNLVRELEKDLKVANVICKNGRRNLTSSMNEASRDLIVHTHSKKKQALLDMLPILTDLR
YARVMQSSLEDLVDEGNYCKAFQVLSEYLQLLDSLSEFSAIQEMTRGVEVWLGRTLHKLD
SLLLGVCQEFKEDSYVMVLDAYALIGDVSGLAEKIQSFFMQEVISETHSVLKTVVGEDSS
AATQVSRLTYSDLCLQTPESKFRQCLLRTLAVLFQLIYSYHEIMSFAPEKKGKASELEQV
ESYISTSSASTQKIGSVSDTSCVPQDGGLSSAMSSESVPTISAEESSGRETSSPIKQASN
STKGDSRDFGDTASNGESPWYYLRKESAALVSETLQRGRRNLWQLTTSRVSVLLSSPAAS
STSMHQFLKNYEDLSVFILAGEAFCGFEVVDFREKLKGVCENYFTAFHRQSMHALKMVLE
KETWTKLPPGTVQAINFAGLVGDGAPLIMSSRSASGFSRFPHSNKSNDSIDLSGNRSGFS
YWLKSGNPFSVKLTYYREDQDYSSVNGAASRDFDGDDRTQEDVVNPKIRDAKRINGGSPV
SGDENEDLHADYIDEDSQLPRRSFTRSVSRSSSSHISTNDDFTAQTGSSLCLLRSMDKYA
RLMQKLEIVNVEFFKGICQLFGVFFYFVYQVFGQENTTSGGKGVADSSNHRLKSCLSRIS
QECEQWINPQFSSSPSSFPNTVHSLADVTPASPIKASVSGTSFSLKERCAAADTVSLVAR
TLHKSKAHLQSMLMSRNGSLVEDFFGQLVGSVPELTEHLHRTTARILLHVNGYVDRIANS
KWEVKELGVEHNGYVDLMLGEFKHYKTRLAHGGIQQEVQNLLLQYGVEIFAEMLVEGFSR
IKRCTDEGRALMSLDIQVLINGLQHFVPTKVKPKLQIVETFIKAYYLPETEYVHWARAHP
EYTKAQVIGLVNLVATMKSWKRKTRLEVVEKIESAAA
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atgcagcctaatctgttcccattcctcttcaatggcggcgccgatctaaacggcttcgag
cgctcaaggcttttcntcttattatcatcccaaggccacggaggaggcaccatggatttc
tccaaagtcggcgaaaaattcctcagctctgtcaagtccgctaaatcactcggactccta
ccttcttcttccttctctgatcgccctgagattccggcacgtgctacggctgcagctgct
gttgctcgtgctttggctgggcttcctcctgatcagagattgagtatttcttctactgcc
actgagcttagctctatttatggtaacaacatgcctcctcctcaactagtcgaagagctt
gaagaaggcttctatcaagaggactttgatccagtaaggcatattctggagaatattccg
gatgatcaaagtgaacttgcttattttgagaagcaggccaccctgaggttggtgcagcta
gatagcgtggcagaagatctgtctcatcatgttatggagcatcatgaagtaatggtgaag
gggatgaatctggttagagaattggaaaaagatttaaaggttgcaaatgtcatctgcaag
aacggaagacggaatttgacttcttccatgaatgaggcttcaagagatcttattgtacac
actcattccaaaaagaagcaagctcttctggacatgcttcctatattaaccgatcttcgc
tatgcaagagtaatgcagtcaagtcttgaagaccttgttgatgaaggaaactattgcaag
gcatttcaagttttatctgagtacttacagcttcttgacagtctatccgagttttcagca
atccaagagatgacccgtggtgttgaggtttggttaggaagaactcttcataagctggat
tcacttttgttgggcgtttgccaagagttcaaagaagatagttatgtaatggtccttgac
gcttatgcactgatcggtgatgtttctggtctcgccgagaagatacagagcttctttatg
caagaagttatctcagaaacgcactcagtgctaaagaccgttgttggggaggatagcagt
gctgccacccaagttagtagacttacatacagcgatctatgtcttcagacaccagaatcc
aagtttaggcaatgtcttttgagaacactagctgtgctatttcagttaatatattcgtac
catgagataatgagtttcgctcccgaaaagaagggcaaagcttctgaactggaacaagta
gaaagctatatctcaacaagttctgcatcaactcaaaagattggttcagtgtcagacact
tcttgcgtcccacaggatggtggtctctcttcagccatgagttcagaaagcgtacctacc
atttctgctgaagagtctagtggaagagaaacctccagtccaataaagcaagcgtctaat
agtacaaaaggcgactctagggattttggagatacagcatctaatggagagtcaccatgg
tactatctacgaaaagagagtgctgctcttgtttcagaaactctgcaaagaggacgcaga
aatctctggcaactgacaacaagccgtgtgtcagttttgctctcatccccagctgcttct
tcaacaagtatgcatcagttcctaaaaaattatgaagacctgagcgtctttatccttgct
ggggaagcattctgtggatttgaagttgttgattttagggagaagctaaagggtgtatgc
gaaaattatttcactgcattccataggcaaagcatgcatgcgctcaaaatggtcctggag
aaggagacgtggacgaaactgccacctggtactgtgcaagctattaattttgccggtctt
gtaggggatggggctcccctaattatgtcttcccgaagtgcctctggtttttccagattc
cctcactccaataagtcaaatgactcgattgatcttagtggaaacaggagtggattctca
tattggttgaaaagtggaaaccctttctcagtaaagttaacttactacagagaagatcaa
gactactcctctgtcaatggagctgcctctagagattttgatggggatgatcgtactcaa
gaggacgttgtaaatcccaagataagagatgcaaaacgcataaacggaggtagtcctgtt
tcgggagatgaaaacgaagaccttcatgctgactatatcgacgaggatagtcagcttcca
agacgaagttttacacgtagtgtatcaaggagttcttcttcacatatcagtactaatgat
gattttacagcgcaaacaggatcctcgctttgtcttctaaggtcaatggataagtacgcg
aggcttatgcagaaacttgaaattgttaatgtcgaattctttaagggaatatgccaattg
tttggggtctttttctatttcgtgtatcaagtttttggtcaagagaatacgacgtcaggt
ggaaaaggagttgccgactcttccaatcatcgtttgaaaagctgcttatcccggatatca
caagagtgtgagcaatggataaaccctcagttttcatcatcaccatcttccttccccaac
acagttcatagtcttgcggacgtgactccagctagtcccataaaagcatctgtatcaggc
acatcttttagtctcaaggaaagatgtgctgcagcggacactgtttctcttgtggcccga
acactgcataaatcaaaagctcatctccagtctatgcttatgtcaagaaatggctctttg
gttgaagacttctttggtcaactggttggttccgtacctgaactgacagagcatttacat
aggacaactgcaaggatactgctgcacgttaatggatatgttgaccggattgctaattct
aaatgggaagtcaaggagcttggagtggagcataatgggtatgttgatttgatgctgggg
gaattcaaacactacaaaacaaggcttgctcatggaggaatccaacaggaggtccagaat
ctcctactgcaatatggagttgaaatatttgcggagatgctggtcgaagggttctctcga
ataaaaagatgtactgatgaaggacgtgctctcatgtcattagatattcaggtcctaata
aacgggctacagcactttgtgccaacaaaggttaagccaaagttacagatagtcgaaaca
tttatcaaggcatactatctgccagagacggaatatgtccactgggcaagggctcatccg
gaatatacgaaagcacaggtcattggactggtgaatttagtagccaccatgaaaagctgg
aagaggaaaacgcgactagaagttgtggagaagattgaatcagctgctgcgtag
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