Raphanus sativus (radish): 108854436
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Entry
108854436 CDS
T06014
Name
(RefSeq) zinc finger CCCH domain-containing protein 41
KO
K13192
RNA-binding protein 26
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
rsz01009
]
108854436
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108854436
03041 Spliceosome [BR:
rsz03041
]
108854436
Protein phosphatases and associated proteins [BR:
rsz01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108854436
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
108854436
Spliceosome [BR:
rsz03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
108854436
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_Nup35
zf_CCCH_4
zf-CCCH
RRM_7
Motif
Other DBs
NCBI-GeneID:
108854436
NCBI-ProteinID:
XP_018483500
UniProt:
A0A6J0NG18
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Position
4:13005180..13009677
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AA seq
886 aa
AA seq
DB search
MELSSPKERVLSSSDCMSDPEEEEEHEISEDEDDDRNHKHRRKEEETRSQSQSLEQGSSD
HQARPYRKNYRHSGNGEHEKRSMGGGGSSAQRVQFDNQRARSNPMFSRDSGHGRGGRGNY
GSWAPQRDSRFNPVDLSSHMVPNMFGGRGLGGVPAAQSAPWPAFGMINGVPNGGLDAFHH
MQGPLRPPLNASLNMGIARQRCRDFEERGFCLRGDMCPMEHGINRIVVDDVQSLSQFNLP
VSGPGAPHMAASSKPVPAQFGTANFMNTKGAHGKTNEGGIAVDGMGYGDAYPSAGGTDFY
DPDQPLWNNSAGETSGALPALSSHGIDENVAPLDDNNQDGPENAGGIRDSRSKSQPVWGR
THGFEDQLKEASVNSSRHGKQNHVGESVTKVVGSSNASSDAMNNTRKPMQKAMRTLFVNG
VPHEINRKDLILAHFQKFGKVIDIRIPINTERAFVQFSKREEAESALRAPDAVMGNRFIK
LWWANRDSIPDNGLSTGNGASVNGRVMAASGRQNQLAIAAASKSNHVTSTAKGPAFRAGG
APSSSEQPKPVGVTSGPKVTPLQQRKADDLERLKETLRKKQEMLEQKREEFRKKLAKLEK
GTVVKGEEADEPDAKRVKVDTASNSDAATSSPKTVSSTDKKKVPIQKPLYSAKISTETPS
PDPKKHLKQRPYPFTTSLNTPMVNRYKLDNRPTTIKVVPPLPTGLADVAVLKEHFSSYGE
VSKVELEEDASTDGGKDQDETDKENRNRAACITFVKRSAAEKAFANAKCWQEHTLQLKWV
TRQSNRENNSSSNNNNNHLSVTGDHLSSKNKCTASVSNDPKPKDEQVKASSTEEPGNTNV
SGDDKTLDERETKESDNGNNKSNSESVEGASEAVAVSEADEKQING
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atggagctttcttctccaaaggaacgcgttttatcttcatctgattgtatgagtgaccct
gaggaggaggaggagcacgagatcagtgaggatgaggatgacgatcgcaaccataagcac
cgtaggaaagaagaagagacgaggtctcagtctcagtctctggagcaaggctcttcagat
catcaggctaggccctacaggaaaaactatagacattctggaaacggtgaacatgagaag
cggtctatggggggaggagggtcgtcagcgcaacgtgtacagtttgataatcagagagca
aggtcgaatccaatgttttcgagggactctggtcatggtagaggaggtagaggcaactac
ggttcttgggctcctcagcgtgattccaggtttaatcctgttgatctctcgtctcatatg
gttcccaacatgtttggaggaaggggattaggtggtgttccagctgctcagagcgcgccg
tggcctgcttttggaatgattaatggagttccaaatggtggcttggatgctttccatcac
atgcaagggcctctaagaccgccgttaaatgcttcactcaacatgggtattgctaggcag
cgatgcagagactttgaggagcgtggtttctgccttagaggggatatgtgtcccatggag
catggaattaatcgtattgttgttgacgatgttcagagtctatcacagttcaaccttccc
gtttctggccctggtgcacctcatatggcagcttcttctaaaccagtgcctgcacagttt
gggactgctaatttcatgaatactaaaggagctcatgggaagactaatgagggtggaata
gctgttgatggtatgggttatggtgatgcatatcctagtgcaggtggaactgatttttac
gatcctgatcaacctttgtggaataacagtgctggtgaaacgtcaggggcattgcctgca
ctaagttctcatgggattgatgagaatgtagctcctctggatgacaataaccaagatggc
cctgaaaatgcgggtggtattagagactcaagaagcaaaagtcaaccggtatggggaaga
acgcacggttttgaagatcaactgaaagaggcttcagttaattcatcacgccatggtaaa
caaaaccacgttggtgaaagtgtcacaaaagttgttggttcatcaaatgcttcaagtgat
gcgatgaacaatacaagaaaaccaatgcaaaaggcaatgcggactctatttgtcaatggt
gttccccacgagatcaacagaaaggacctcattcttgcccattttcagaaatttgggaaa
gttattgacattcgcatcccaattaacactgaacgggcatttgttcagttctcaaaacgc
gaagaggctgaatctgctctcagggcacccgatgctgtgatgggtaaccgctttatcaaa
ctttggtgggcaaatagagatagtattcctgataatggcctctccactggcaacggtgct
tctgtgaatggtcgcgttatggctgcttccggaaggcagaaccaacttgctattgctgca
gcatcgaaaagcaaccatgtaacttctactgcaaagggtcctgccttccgcgccggtgga
gctccatcatcatctgaacagcctaagcctgtgggggtcacaagtggtcccaaggtcacg
ccgcttcagcagagaaaagcagacgatcttgagcggttgaaggagacacttcggaaaaag
caggaaatgctggagcaaaagcgtgaggagttccgcaaaaagttggcgaaacttgaaaaa
ggtacggttgtcaagggcgaggaagcagatgagccagatgccaagcgcgttaaagtagac
acagcctccaactccgatgctgcaacctcgtcaccaaaaacagtgtcatccacagataag
aagaaagtgcctatccagaaaccactttattctgctaaaataagcactgaaacgccatct
cccgatcccaaaaaacacttaaaacaaagaccttatccgttcaccacaagtttgaacact
cctatggtgaataggtataagttggacaaccgcccgactaccatcaaagttgttcctcct
ttgccaaccgggttagctgatgttgctgtcctaaaggaacatttttcatcttatggcgaa
gtctcaaaagtggaactcgaagaggatgcatcgactgatggtggcaaggatcaggatgaa
acagataaagaaaaccgtaaccgtgcagcttgtatcacatttgtgaaacgcagcgcagcc
gagaaagcgtttgctaacgcaaaatgctggcaagaacacacgttgcagctcaagtgggta
acacgtcaaagcaacagagagaataatagtagcagcaacaacaacaacaatcatctctct
gttactggtgaccaccttagcagcaaaaacaagtgcactgcttccgtctctaatgaccca
aaaccaaaagatgaacaagtcaaagcctcgtctacagaagaaccagggaacacaaatgtc
tctggagacgacaagacgttggatgaacgggagaccaaagaaagcgataacggcaacaat
aaaagtaacagcgagtctgtcgaaggagcttctgaagcggttgcagtgtccgaagctgat
gaaaaacagataaatggttaa
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