Raphanus sativus (radish): 108854524
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Entry
108854524 CDS
T06014
Name
(RefSeq) ABC transporter B family member 1
KO
K05658
ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:
7.6.2.2
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
108854524
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
rsz02000
]
108854524
04147 Exosome [BR:
rsz04147
]
108854524
04090 CD molecules [BR:
rsz04090
]
108854524
Enzymes [BR:
rsz01000
]
7. Translocases
7.6 Catalysing the translocation of other compounds
7.6.2 Linked to the hydrolysis of a nucleoside triphosphate
7.6.2.2 ABC-type xenobiotic transporter
108854524
Transporters [BR:
rsz02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB1, 4, 5 subgroups
108854524
Exosome [BR:
rsz04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
108854524
CD molecules [BR:
rsz04090
]
Proteins
108854524
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
SMC_N
AAA_16
ABC_ATPase
Zeta_toxin
AAA_22
RsgA_GTPase
AAA_29
nSTAND1
AAA_5
AAA
AAA_30
AAA_15
AAA_25
APS_kinase
DUF87
Rad17
Motif
Other DBs
NCBI-GeneID:
108854524
NCBI-ProteinID:
XP_018483616
UniProt:
A0A6J0NHM3
LinkDB
All DBs
Position
4:39891049..39896764
Genome browser
AA seq
1332 aa
AA seq
DB search
MSQESVQTEEEIKSVQEQWRWSEMQELEPHPEPSSNANNSRNPETELREQPPEMENHGGA
PPPEPKKAEIRGVAFKELFRFADGLDYALMGIGSVGAFVHGCSLPLFLRFFADLVNSFGS
NANNVDKMMQEVLKYALYFLVVGAAIWASSWAEISCWMWTGERQTTKMRIKYLEAALNQD
IQFFDTEVRTSDVVSAINTDAVMVQDAISEKLGNFIHYMATFVSGFIVGFTAVWQLALVT
LAVVPLIAVIGGIHTTTLSKLSNKSQESLSQAGNIVEQTVVQIRVVMAFVGETRASQAYS
SALKTAQRLGYKTGLAKGMGLGATYFVVFCCYALLLWYGGYLVRHRLTNGGLAISTMFAV
MIGGLALGQSVPSMAAFAKAKVAAAKIFRIIDHRPTIERNSESGVELDSVTGLVELRNVD
FSYPSRPDVKILNDFTLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDL
KTLKLKWLRQQIGLVSQEPALFATSIRENILLGRPDADQVEIEEAARVANAHSFIIKLPD
GFDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMI
GRTTLIIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFAKGDNGVYSKLIKMQEAAHETA
MNNARKSSARQSSARNSVSSPIMTRNSSYGRSPYSRRLSDFSTTDFTFSIEASSYPNYRH
EKLPFKDQANSFLRLAKMNSPEWKYALLGSIGSVVCGSLSAFFAYVLSAVLSVYYNPNHE
YMIKQIGKYCYLLIGLSSTALIFNTLQHSFWDIVGENLTKRVREKMFTAVLKNEMAWFDQ
EENESARISARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFP
VVVAATVLQKMFMTGFSGDLEGAHAKGTQLAGEAIANVRTVAAFNSEAKIVRLYTANLEP
PLKRCFWKGQIAGSGYGVAQFCLYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSAN
GAAETLTLAPDFIKGGQAMRSVFELLDRKTEIEPDDPDTTPVPDRLRGEVELKHIDFSYP
SRPDIQVFRDLTLRARAGKTLALVGPSGCGKSSVISLIQRFYEPSSGRVMIDGKDIRKYN
LKALRKHIAIVPQEPCLFGTTIHENIAYGHECATEAEIIQAATLASAHKFISALPDGYKT
YVGERGVQLSGGQKQRIAIARALVRKAEIMLLDEATSALDAESERSVQEALDQACSGRTS
IVVAHRLSTIRNAHTIAVIDDGNVAEQGSHSQLLKNYPDGIYARMIQLQRFTHGQVIGMT
SGSSSRVKEDDA
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaagaatctgttcagacagaagaagaaataaagtcagtgcaggaacaatggcgt
tggtccgaaatgcaagaacttgagcctcaccctgaaccttcctccaacgccaacaactcg
agaaacccagaaacagagctccgggaacaaccaccggaaatggaaaaccacggcggtgct
cctcctccggagcccaaaaaagcagagattcgtggagttgcattcaaagagctattcaga
ttcgcagacggattagattacgccctgatgggaattggctccgttggcgctttcgtccac
ggctgctctttacctctgttcctcagattcttcgccgatctcgttaactccttcggctct
aacgctaacaacgtcgacaagatgatgcaagaagtcctcaagtatgctctttacttcctc
gtcgttggtgctgcaatctgggcttcctcctgggcagagatatcgtgttggatgtggacg
ggagagagacagacgacgaagatgaggataaagtatttagaagcagctttaaaccaagac
attcagttcttcgacactgaggttcgaacttccgatgttgtctccgccattaacaccgac
gctgttatggtccaagacgccattagcgagaagttagggaacttcatccattacatggcg
acttttgtgtccggattcatcgtgggtttcacggcagtgtggcaactagcgttagtgaca
ctcgcggtggttccgttgatagctgtgatcggaggaatccacaccacaactctctctaag
ctctctaacaagagtcaagagtctctttctcaagctggtaacatcgtcgaacagacagtg
gtgcaaatcagggtagttatggcgtttgtcggagagacgagagcctctcaagcttattca
tcagcattgaaaacagctcagagacttggttacaaaacaggtttagctaaaggaatggga
ctcggtgctacttacttcgtcgtcttctgttgctacgctctcttgctttggtacggtggc
tacctagtccgtcatcgtttgaccaacggtggtctcgctatatccaccatgttcgccgtc
atgatcggtggcttggcattggggcaatcagtaccgagcatggctgcatttgcgaaagct
aaagtcgctgctgcgaagatctttagaatcattgatcataggcctaccatagagcgtaac
agcgagtccggtgtggagctagactctgtcacgggcctcgtcgagcttagaaacgttgac
ttttcgtacccgtcgagacctgatgttaagatccttaacgacttcacactctctgtccct
gcggggaagaccatagcgttggttggaagcagcggttcgggcaaaagcacggtcgtttcg
cttatcgagaggttttacgacccgacttcaggacaagttttactagatggacatgacctg
aagacgctgaaacttaaatggttaaggcaacagatagggcttgtgagccaagaaccagca
ctgttcgccacttctatcagagagaacatactcttgggccgtcccgacgcggatcaagtc
gagatagaggaggctgctcgcgtcgcaaacgctcattcctttatcattaaactacctgat
ggcttcgacacacaggtaggggagagaggactacagctttcaggtgggcagaaacaaaga
atagcgatcgcaagagccatgttaaagaacccggcgatacttcttttagatgaggcgacg
agtgcgttggattctgagtcagagaagctagtgcaagaagccttggatcgtttcatgatc
ggaaggacgactctcatcattgctcatcgtctttccaccatacgcaaagccgacctcgtt
gctgtgcttcagcaaggaagcgtctctgagattggaactcacgacgagcttttcgccaag
ggagataatggtgtatattctaagcttatcaaaatgcaagaggcagctcacgagaccgcc
atgaacaatgcaagaaagagtagcgcaagacagtcgagtgctagaaactccgtgagctca
ccaataatgacacggaactcttcatatggaagatcaccgtactcacgtagactctcagac
ttctcaactaccgactttaccttctccattgaagcttcttcttacccgaactatcgtcac
gagaagctacccttcaaggaccaagccaactccttcttgcggctagctaaaatgaactca
ccagagtggaaatacgctctcctcggctctataggctctgtcgtctgcggctcgctcagc
gcctttttcgcatacgtcctaagcgcggtcctaagcgtctactacaaccccaaccacgag
tacatgatcaagcagatcggcaagtactgttacctcttgatcggtctatcctcaacggcg
cttatcttcaacacgctccagcattctttctgggacatcgtcggtgagaatctgaccaag
agggtccgtgagaagatgttcacggcggtgcttaagaacgagatggcttggtttgatcaa
gaggagaacgagagcgcaagaatctcggcgaggttggctcttgatgctaacaacgtgagg
tccgctataggagatagaatctcggtcattgtgcagaacactgctttgatgcttgttgct
tgtactgctggctttgttctgcaatggagactggcacttgtcttggtcgctgtcttccct
gttgttgttgctgcaactgtcttacagaaaatgttcatgactggcttctctggagaccta
gaaggggcgcatgccaaggggacacaactcgctggtgaggccatagctaatgtcaggaca
gtcgctgctttcaactcagaggcaaagattgttcgtctctacacagcaaacctcgagcca
cctttgaaacgctgcttctggaaaggacagatcgctggaagtggctacggtgtagcacag
ttctgtctttacgcatcttacgctctagggctatggtacgcctcgtggcttgtgaaacac
ggcatctctgacttctccaaaaccataagagtcttcatggttctgatggtctcagctaac
ggtgcagcagagacgcttactttagctcctgatttcatcaaaggtggtcaggctatgcgg
tcggttttcgagctccttgaccgaaaaaccgaaatcgaaccggatgatcctgataccacc
ccggttccggaccggttacgcggcgaggttgagctgaaacacattgatttctcttaccct
tcgagaccagacatacaagttttccgtgacctaacccttcgtgcaagagccggcaagact
ctagctctcgtcggtccaagcgggtgcggcaaaagctcagtcatctcccttatacaaaga
ttctacgagccgtcctcagggcgtgtcatgatcgacgggaaagacataagaaagtacaat
ctcaaagccctaaggaaacacatagccattgtccctcaagagccgtgcctatttggaaca
accattcacgaaaacattgcgtacggacacgaatgtgccaccgaggcagagataatacaa
gcagctacgctagccagcgcgcacaagttcatatccgcattgcctgatggttacaagacg
tatgtcggagagagaggtgttcagctctccggaggacagaaacagaggattgctatcgcg
cgtgccttggtgaggaaggcagagatcatgctgctagatgaggctacaagcgctcttgat
gcagagtcagagaggtcggtgcaagaagcgttggaccaggcttgttctggtagaacatcg
atcgttgtggctcataggttgtctacgatcaggaatgctcatacgatagctgtgattgat
gatgggaatgttgcggagcaagggtcgcattcgcagcttctcaagaattatcctgatgga
atctacgcgaggatgattcagttgcagaggtttacgcatggtcaggttattggtatgacg
tcagggtcgagttctagggttaaggaagatgatgcttag
DBGET
integrated database retrieval system
